Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0841 TTGTTGTCGATTTCTTCCATTCCTATTGGCGCGGCGGCGTGTACTGCCACCACTTTGATTCCTTACGTTGAGATGGTGGTCCGGTGCCGGAGACTCGTCGGTGTAATGGGTTGCGTGAGCGGCGGAGGAAAAGGTGTTGGGGAAGTGGCGGCGTCGAGGGCGGCGGTGGTGGCGCTGCCGGCGGTGGAAGTGGAAGCGGGTGGAAGAGAATGTGTGATATGCAAGGAGGAGATGGGGATAGGGAGGGACGTGTGCGAGCTGCCATGTCAGCATTTGTTTCATTGGAAGTGTATATTACCGTGGCTGAAGAAGAGGAACACGTGTCCTTGCTGCAGGTTCCATCTGCCGTCGGATAATGTGCTGGGAGAGATCCAACGGCTGTGGGAGGTGTTGGTGTGA 399 0.5689 LLSISSIPIGAAACTATTLIPYVEMVVRCRRLVGVMGCVSGGGKGVGEVAASRAAVVALPAVEVEAGGRECVICKEEMGIGRDVCELPCQHLFHWKCILPWLKKRNTCPCCRFHLPSDNVLGEIQRLWEVLV 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0841 132 ProSiteProfiles Zinc finger RING-type profile. 71 112 IPR001841 -
Sto8g0841 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 118 IPR013083 -
Sto8g0841 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 132 - -
Sto8g0841 132 SUPERFAMILY RING/U-box 66 117 - -
Sto8g0841 132 SMART ring_2 71 111 IPR001841 -
Sto8g0841 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 14 132 - -
Sto8g0841 132 Pfam Ring finger domain 70 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0841 Sto-Chr8 5311734 5312132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0841 10 132 C3H Transcription Factor Family AT5G02750 51.128 9.95e-44 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0841 - - pvu:PHAVU_007G161400g 181.03