Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0819 ATGGTCGTGTCTCAATTTCACGGTGAGGAAATTAGAAAGGCACGtggtaataataatgataataactgTACAGAGTTCGAATGCAAGACGTGCAATCGCAAGTTCTCGTCGTTTCAAGCGCTTGGGGGTCACAGGGCGAGCCACAAGAGGCCCAAGCTAGAAGGGGAAGATGAGCTCAAAGCTCAGGCCAAAAGTCTCAGCTTGTGGAACAAACCCAAAACGCATCACTGTTCTATTTGTGGGATGGAATTCTCTGTGGGACAAGCCTTGGGTGGTCACATGAGGAAGCATagggataataataataataataaggttgCTCTTAATTATTATGACCCACCACACTTTGCTTCTGTGCTTCTTCCTCAAGTACTCTCAGTTAGCAAAACGGTGCGTTTGGACCTCAACTTAACGCCTCTCGAGAATGACTTGAAGTTGTTGTTTGGAAATTACGCTACGCCAAATGTGAAAGTAATTTGA 480 0.4167 MVVSQFHGEEIRKARGNNNDNNCTEFECKTCNRKFSSFQALGGHRASHKRPKLEGEDELKAQAKSLSLWNKPKTHHCSICGMEFSVGQALGGHMRKHRDNNNNNKVALNYYDPPHFASVLLPQVLSVSKTVRLDLNLTPLENDLKLLFGNYATPNVKVI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0819 159 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Sto8g0819 159 SMART c2h2final6 75 97 IPR013087 -
Sto8g0819 159 SMART c2h2final6 26 48 IPR013087 -
Sto8g0819 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Sto8g0819 159 Gene3D Classic Zinc Finger 23 97 - -
Sto8g0819 159 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 20 151 - -
Sto8g0819 159 Pfam C2H2-type zinc finger 75 99 - -
Sto8g0819 159 Pfam C2H2-type zinc finger 26 51 - -
Sto8g0819 159 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Sto8g0819 159 PANTHER ZINC FINGER PROTEIN ZAT5 20 151 - -
Sto8g0819 159 SUPERFAMILY beta-beta-alpha zinc fingers 26 97 IPR036236 -
Sto8g0819 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0819 Sto-Chr8 5178697 5179176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0819 25 158 C2H2 Transcription Factor Family AT2G37430 48.148 7.85e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g0819 zf-C2H2_6 3.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0819 - - aprc:113870747 166.777