Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0809 ATGGCTGCTCCTCCCGCTAGAGCTCGAGCTGATTACGATTACCTTATAAAGCTCCTCCTCATCGGCGACAGCGGCGTGGGTAAGAGTTGCCTTCTATTGCGTTTCTCAGATGGGTCTTTTACAACAAGTTTTATTACAACAATTGGCATTGACTTTAAAATTAGGACCATAGAGCTGGATGGCAAGCGAATTAAATTGCAAATATGGGATACTGCTGGTCAGGAGCGGTTTCGAACAATTACTACTGCTTATTATCGTGGAGCCATGGGTATTCTGCTAGTCTACGATGTCACTGATGAGTCATCTTTTAACAAAATTAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCTGACAATGTCAACAAGATACTGGTGGGTAACAAAGCTGACATGGATGAAAGCAAAAGGGCTGTTCCAACCGCAAAGGGTCAAGCTCTGGCAGATGAATATGGCATCAaGACCTGTTCTTTGATGGGAGAGGGAGCAGTCTTTGTCGAGTTAGCAGATGGAAGGAGGGAAAACGATGAGATACCAAGAACAGAACTGAAGCGAGACTACCAATGTCTCGTTGAGACTGAACCTGACCCTGCTCATAAGAAAGCAAAAGAAGTTTCCAATGATGACGTGCACTCTGAGGTGTCCAACCCCAATATTTCTTCGAGTGAGAATGCCTCAACTTCTCAAGATATCAGTAGCCAACCAACTGAGTTGGCAAACGTTAATCAGGCAGAGTGTGGGGATGTGGCATGCGCTTGTTTGGAGAATCCAATTTCTGATGAGACCTTGAGTGATGTAGGGGGTGATCAGAATAATGCTTCTCAGAATCATAAAGATTCGACTAGTGCTGCCGTGACATCCTGTGTTGTGATGGAAATTCCAAAGCATGCTAGTTCATCTGGAATCAGAAAGATAACTTTTAAGTTCAGTAAGAAGAAGGAGGACTACGACCATTCTCCTGTTCCTATAGCTATAGGCAGTCCTACTTTCTCCAACAATAGGCTTCAGTGTGGCTTTCATAAGGATGATGAAAAACTCTTGGCCAGGGATGACTGTAGTACGGGGATGCTAGAAAACTTACATGGTTTGGAAGACGTTCAAACTGAAGATTTTAACTTAGCTGTTCGTAACATGGAATTGAAAATGTCGAAGAAGGTAGTCCCGAGCTGTTATCCTACCAATGTGAAAAAGCTGTTATCCACTGGTATCCTTAACGGAGCTCgagtgaaatatatttatagtgCAGGAGAGATTGAGGTGCCTGGAATTATAGAGGGTGGTGGGTATGTGTGTGGCTGTTCAGTCTGCAATTATTCGAGAGTGCTTAGTGCCTATGAGTTTGAGCAGCATGCCGGTGCCAAGACCAGACACCCAAATAATCATATATTCCTGGAGAATGGAAGAccaatatatagtattataCAGGAAATCAAAACTGCTCCACTCAGCTTATTAGAAGAGGTGATAAAGGGTGTGGCTGGTTCATCTGTCAACGAGGAGTCATTTCGGATTTGGAAAGCAGGTGTTCTACAAAGCAATGAGATGATTGAGGCAGATAAGCAGTATAACAGCAAGTTTATGGGTGTGCCCCATTCAACTAAAAGTCATTCTGTAGAAGGTATGACCTACATGTCTCCTTTATACACGCTGAGTCCTCTAGAGCAGCAAATGTGTGTGAAACAAACAAGTGTGAACCGGAAACCTATGAAGAAACCAAGCTCCTATACTTCTAACCCTGGTAAACAACAGAAGAGAAGTGTTGATGGTTGTACTAAGAGAAGGGACAACGATCTTCATAGGTTGCTTTTTATGCCGAATGGATTACCAGATGGAGCTGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGTTTGTTGTGATAGAGAGATAAGCCCTTCACAGTTTGAGGCCCATGCTGGAATGGCTGCCAGGCGTCAACCTTATCGCCACATTTATACTTCCAATGGATTAACACTTCATGATATAGCCCTCTCATTGGCAAATGGTCAAAAGCTTACGATGGGCAACAGTGATGATATGTGTGCTGTATGTGGAGATGGTGGGGATTTGATTCTCTGCAATGGTTGTCCAAGGGCTTTTCATACAGCTTGCTTGGGTTTACAGTGTGTTCCAGAAAGTAGTTGGTGTTGTCTAAGCTGTAGAGATAACAATGGCAAAGAAGCCCCTACTACAATGCCTATCATGATACGGTTGACAAGTGTTGTTAAAACAAAAGACTATGAAACAGGTGGTTGTGTCGTTTGCAGGGAAAATGATTTCAGTGTTGTTAAATTTGATGAGCGAACAGTTATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACAGTGGACTTTGTGAATTGGAAGAACTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATAAATGCAGCTGTACAGAGTTTAGTTTGCACTGGATCCGAGATTATACCAGCCTCTTTGTCAGACCTAATATATAGGAAGCATGAGGAGAGGGGATTATGTATTGATGGACATTTGAATGACATCCAGTGGCAAATTCTAAGAGGAAAAAGTCGCTATCCAGATCATTTGCCATTACTTTCACGGGCTGCTGCAATTTTTCGAGAGTGCTTTGACCCCATTGTTGCTATATCTGGTCGTGACCTCATTCCTGTTATGGTCTATGGGAGAAATATTTCAGGTCAAGAGTTTGGCGGGATGTACTGTGTCGTTTTAATAGTGAAATCTGTTGTTGTATCTGCTGGGCTCCTTAGAATATTTGGTCGTCATGTTGCTGAGCTTCCAATGGTAGCGACAAGTAGACAACATCAAGGGAAAGGCTATTTTCAAGCACTATTCTATTGCATAGAGAGATTGCTGTCTTCCCTGAATGTGGAAAAACTGGTGCTTCCTGCATCCGAGGATGCTGAATCAATTTGGACCAAGAAATTAGGTTTTCGAAAGATGAGTGAAGATCAGTTATCTAAGTATCTCCGAGAGGTTCAGCTGACCCTCTTTAATCGTACTTCAATGCTGGAGAAGACGGTGCAGCTGGGGACAGAATGA 3108 0.4257 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNKIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKTCSLMGEGAVFVELADGRRENDEIPRTELKRDYQCLVETEPDPAHKKAKEVSNDDVHSEVSNPNISSSENASTSQDISSQPTELANVNQAECGDVACACLENPISDETLSDVGGDQNNASQNHKDSTSAAVTSCVVMEIPKHASSSGIRKITFKFSKKKEDYDHSPVPIAIGSPTFSNNRLQCGFHKDDEKLLARDDCSTGMLENLHGLEDVQTEDFNLAVRNMELKMSKKVVPSCYPTNVKKLLSTGILNGARVKYIYSAGEIEVPGIIEGGGYVCGCSVCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSLLEEVIKGVAGSSVNEESFRIWKAGVLQSNEMIEADKQYNSKFMGVPHSTKSHSVEGMTYMSPLYTLSPLEQQMCVKQTSVNRKPMKKPSSYTSNPGKQQKRSVDGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCVCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQKLTMGNSDDMCAVCGDGGDLILCNGCPRAFHTACLGLQCVPESSWCCLSCRDNNGKEAPTTMPIMIRLTSVVKTKDYETGGCVVCRENDFSVVKFDERTVIICDQCEKEYHVGCLRDSGLCELEELPKDKWFCCDDCNRINAAVQSLVCTGSEIIPASLSDLIYRKHEERGLCIDGHLNDIQWQILRGKSRYPDHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCVVLIVKSVVVSAGLLRIFGRHVAELPMVATSRQHQGKGYFQALFYCIERLLSSLNVEKLVLPASEDAESIWTKKLGFRKMSEDQLSKYLREVQLTLFNRTSMLEKTVQLGTE 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0809 1035 MobiDBLite consensus disorder prediction 562 585 - -
Sto8g0809 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 154 IPR027417 -
Sto8g0809 1035 MobiDBLite consensus disorder prediction 192 210 - -
Sto8g0809 1035 SUPERFAMILY FYVE/PHD zinc finger 688 738 IPR011011 -
Sto8g0809 1035 ProSitePatterns Zinc finger PHD-type signature. 764 819 IPR019786 -
Sto8g0809 1035 SMART PHD_3 692 733 IPR001965 -
Sto8g0809 1035 SMART PHD_3 763 820 IPR001965 -
Sto8g0809 1035 SMART rho_sub_3 18 170 IPR001806 GO:0003924|GO:0005525
Sto8g0809 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 753 IPR013083 -
Sto8g0809 1035 ProSiteProfiles small GTPase Rho family profile. 9 187 - -
Sto8g0809 1035 CDD PHD1_AIRE 692 732 - -
Sto8g0809 1035 TIGRFAM small_GTP: small GTP-binding protein domain 14 143 IPR005225 GO:0005525
Sto8g0809 1035 Gene3D - 9 187 IPR027417 -
Sto8g0809 1035 Pfam Ras family 17 154 IPR001806 GO:0003924|GO:0005525
Sto8g0809 1035 ProSiteProfiles small GTPase Rab1 family profile. 11 251 - -
Sto8g0809 1035 ProSiteProfiles Zinc finger PHD-type profile. 690 735 IPR019787 -
Sto8g0809 1035 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 177 1031 - -
Sto8g0809 1035 SMART arf_sub_2 1 176 - -
Sto8g0809 1035 ProSiteProfiles Zinc finger PHD-type profile. 761 822 IPR019787 -
Sto8g0809 1035 SMART ran_sub_2 21 211 - -
Sto8g0809 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 822 IPR013083 -
Sto8g0809 1035 SMART ras_sub_4 17 189 - -
Sto8g0809 1035 Pfam Tify domain binding domain 422 476 IPR032308 -
Sto8g0809 1035 Pfam Tify domain binding domain 626 675 IPR032308 -
Sto8g0809 1035 ProSiteProfiles small GTPase Ras family profile. 6 291 IPR001806 GO:0003924|GO:0005525
Sto8g0809 1035 SMART rab_sub_5 16 175 - -
Sto8g0809 1035 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 872 1022 IPR000182 GO:0016407
Sto8g0809 1035 MobiDBLite consensus disorder prediction 192 236 - -
Sto8g0809 1035 PRINTS Transforming protein P21 ras signature 16 37 - -
Sto8g0809 1035 PRINTS Transforming protein P21 ras signature 39 55 - -
Sto8g0809 1035 PRINTS Transforming protein P21 ras signature 57 79 - -
Sto8g0809 1035 PRINTS Transforming protein P21 ras signature 119 132 - -
Sto8g0809 1035 MobiDBLite consensus disorder prediction 562 591 - -
Sto8g0809 1035 PANTHER AUTOIMMUNE REGULATOR 177 1031 - -
Sto8g0809 1035 ProSitePatterns Zinc finger PHD-type signature. 693 732 IPR019786 -
Sto8g0809 1035 Gene3D - 911 1018 - -
Sto8g0809 1035 CDD Rab8_Rab10_Rab13_like 13 154 - -
Sto8g0809 1035 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 914 1005 IPR016181 -
Sto8g0809 1035 SUPERFAMILY FYVE/PHD zinc finger 755 819 IPR011011 -
Sto8g0809 1035 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0809 Sto-Chr8 5101962 5111674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0809 159 1030 PHD Transcription Factor Family AT3G53680 52.072 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0809 - - gmx:100808999 1321.61