Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0794 atggcgGCTGCGAGGCGTCTTCGTGACCTGCAAGCCCAATCGGCAAACAAGATCTGCGTTGATTGCTCTCAGAAGAATCCCCAATGGGCTTCCGTTTCCTATGGAGTCTTCATGTGCTTGGAGTGCTCCGGCAAGCACCGTGGCCTCGGTGTTCATATTTCCTTCGTTCGATCCGTCACCATGGATTCCTGGTCCGAAATTCAGATAAAAAAGATGGAGGCGGGTGGTAACGACCAACTCAATGCCTTCCTTGCGCAGTATGGCATCTCCAAAGAGACTGATATCGTCACCAAGTACAATACCAATGCAGCTAGCATTTACAGGGATCGAATTCAGGCCCTCGCTGAGGGACGTCCATGGCGGGATCCACCTGTCGTTAAGGAGAACCTTGGCCCTGGGACTGGGGGGAGTAAGCCTCCATTGGCCAAAAGTGCGAATGATGGAGGCTGGGATAATTGGGATAACGATGACGCTTTCAGATCTTCCAATGACGTCAAGCGCAACATGTGTTCCGCCGGTGGCATGCCCACGAGATCGAGGTCGACGGAGGATATCTACACGCGTTCGCAATTGGAGGCTTCCGCTGCTAATAAGGACAACTTCTTCGCTCGGAAGGTGGCGGAGAATGATTCACGACCTGAAGGGCTTCCACCTTCGCAAGGAGGCAAATACGTTGGGTTCGGATCTAGTCCCGCGCCTCCCCAGATGACTAACCCGCAAAATGATGTTTTCTCTGTTGTTTCGGAGGGATTTGGTAAATTATCCTTAGTTGCTGCCTCTGCGGCTCAGTCTGCTGCTAATGTTGTTCAGGCCGGCACTAAAGAGATTGCTACTAAGGTAAAGGATGGTAGTTATGATTACAAGGTCAATGAAACGGTGAATGTTGTCACTCAGAAGACATCAGAACTTGGACACAGGACTTGGGGGATCATGAAAGGGGTCATGGCTTTGGCTACACAGAAGGTTGAGGAGTATACCAGAGAGAACAGTAATTGGAAGACTGATAACTGgcagagaaatgaaaatgatagaAATGGTTGCTATCAAGAATATAATCAAGATAATAAAGGTTGGAATTCTTCTACTGGAGGCCAACCTTCATCAGGTGGGCAGGTTAATACTCACAACCCAAGCTCTTGGGATGACTGGGACAGCAAAGATACCAGAAAGGTAGAGCCAGCAAGAGGATCAATTCCCCCTTCATCAGGTGGGAATTTCAATACTTACAGTTCAATCTCTTGGGATGATTGGGACAACAACGATTCTAGTAAGAAAGAACCAGCTAAAGGATCAGCTCCTCAAAACAGTGATGGTTGGACTGGCTGGGATGATGCCAAAGATGATGAATATGATAATTCCTTCCAGAGTGCGTCAAATAAGAAAGCAGATGGTCATAATGGGAAGTCAGATGACAGCTGGACAGGAGGAGGCTTTCTCTGA 1440 0.4764 MAAARRLRDLQAQSANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDQLNAFLAQYGISKETDIVTKYNTNAASIYRDRIQALAEGRPWRDPPVVKENLGPGTGGSKPPLAKSANDGGWDNWDNDDAFRSSNDVKRNMCSAGGMPTRSRSTEDIYTRSQLEASAANKDNFFARKVAENDSRPEGLPPSQGGKYVGFGSSPAPPQMTNPQNDVFSVVSEGFGKLSLVAASAAQSAANVVQAGTKEIATKVKDGSYDYKVNETVNVVTQKTSELGHRTWGIMKGVMALATQKVEEYTRENSNWKTDNWQRNENDRNGCYQEYNQDNKGWNSSTGGQPSSGGQVNTHNPSSWDDWDSKDTRKVEPARGSIPPSSGGNFNTYSSISWDDWDNNDSSKKEPAKGSAPQNSDGWTGWDDAKDDEYDNSFQSASNKKADGHNGKSDDSWTGGGFL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0794 479 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Sto8g0794 479 CDD ArfGap_ArfGap1 3 117 - -
Sto8g0794 479 Coils Coil 315 335 - -
Sto8g0794 479 MobiDBLite consensus disorder prediction 400 417 - -
Sto8g0794 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 396 - -
Sto8g0794 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 401 479 - -
Sto8g0794 479 MobiDBLite consensus disorder prediction 327 479 - -
Sto8g0794 479 MobiDBLite consensus disorder prediction 331 379 - -
Sto8g0794 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 396 IPR044519 GO:0005096|GO:0016192
Sto8g0794 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 401 479 IPR044519 GO:0005096|GO:0016192
Sto8g0794 479 MobiDBLite consensus disorder prediction 120 184 - -
Sto8g0794 479 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Sto8g0794 479 MobiDBLite consensus disorder prediction 164 184 - -
Sto8g0794 479 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Sto8g0794 479 MobiDBLite consensus disorder prediction 208 239 - -
Sto8g0794 479 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Sto8g0794 479 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Sto8g0794 479 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Sto8g0794 479 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Sto8g0794 479 SMART arf_gap_3 4 120 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0794 Sto-Chr8 5024167 5026702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0794 5 87 C2H2 Transcription Factor Family AT4G21160 50.000 7.83e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0794 K12492 - gmx:100806519 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0794 8 5024167 5026702 Sto13g3333 13 36771809 36774615 CCT
Sto8g0794 8 5024167 5026702 Sto8g0794 8 5024167 5026702 ECH