Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0783 ATGAATCACTGTGTTCCAGATTTCGAAATAgatatggatgatgatgaataccAGATACCTTCCTCTTCTGCAGGCCTACCTCGCCCTAAGAAGCCCTCCATGGCACAAGACGATGTCATGGAGCTCTTATGGCAAAACGGCCAGGTTGTGATGCACAGCCAGAATCAACGCCCTCTCAGAAAACAACATGAAAGGTACACCGACACTATGATTCCCGCCGCCGGTGCTTCCACGGCGAGGGAGATTCGACCCTCTCAACAAGATGTTGAACAATATCACAACCAACATCTATTCATGCAAGAAGATGAAATGGCTTCCTGGCTTCACTATCCAATCGTCGATGATCCTTCCTTGGATCACAATTTCTGCGCCGACATCCTTTACCCGCCCCCGCCGCTTCCACCGCCGCCGCCTCCACCGCCCTCTGTAGATAACGACAGTACCATGCAAAACCCTGTCCGTACATCTCAATTAACGGAACTACGGCCGCCGTCGAGATCCGCAGCTCCTCGGCCGCCAATTCCGCCCCCGAGGAAACCGGAGCAGATTCACACAAAGATACCGAACTTCGCGCACTTCTCCAAACACAATGCCAGAGTTGAACAACCTGCAGGGCCGTCCAATTCGAAGGCCACGATGAGGGAATTTACGGTGGTGGATTCGTGCGACACTCCAGCCGGTGTGGCGTCGGCTTCTAGGGTCTCAGAGACTGTCAGAAACACGGTGGAGCCAACGGAAGAAGATGCCACTCGTGGAACCCTAAGCACGGCCGGAGTTGCGACGACGTCCGGCGGCGGCGATACTGGCTTGAGGGAGGCGACGACGTGCGAGATgactgccacgtcatcgcctGGTGGATCGAGCGGCAGTGCTGACCAGGCTCGGAGACCGCCGGCCGAAGATCGGAAGCGGAAGGGCCGGGAAATCGAGGATTCCGATGCTCACTGTGCGGATGTGGATTTTGAATCAGGTGAAGCAAAAAAACAAACTTGTGGATCATCATCTACAAAGAGATCTCGTGCTGCAGAGGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGCTGCAATAAGTCCGACAAAGCTTCAATGTTGGATGAAGCAATTGAATACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCGATGGGATGTGGGATGGTACCGATCATGTTTCCCGGAATTCAGCAGTATATGCCAACAATGGGAATGGGAATTGGAATGGGGATGGGTATGGAAATGGGAATGAATAGGCCACTAATGCCATTTCCCAACATGTTAGCTGCTTCTGCTTTGCCACCATCAGCAGCAGCTGCTGCAACTGCAACTGCAACTGCAGCTACTGCTCATTTGGGTCCAAGGTTTCCTATGCCTCCTTTCCATATGCCCCATGTCCCACCACCACCTGATTCATCCAGAATCCAACCCTCAACGCCAACAATGAATCAatcagataataataataataacaatatgcTTCCTTCAGTTGTCACACCTGATCATCCCAATCACTCACGGATCCCAAACTTCACTGATCCTTATCATCAATACCTCGGTCCCCACCAGATGCATCTACAGTTCTTGCAGAATCATGCAATGAACAACCCAAATGTGAGCAAGCCAAGTACCAGCAAGAGCCATGAAGATCCAGAAAATAATCAGCCAGGTATGAACTTGATGCCTGCTGTGTCTTAA 1740 0.492 MNHCVPDFEIDMDDDEYQIPSSSAGLPRPKKPSMAQDDVMELLWQNGQVVMHSQNQRPLRKQHERYTDTMIPAAGASTAREIRPSQQDVEQYHNQHLFMQEDEMASWLHYPIVDDPSLDHNFCADILYPPPPLPPPPPPPPSVDNDSTMQNPVRTSQLTELRPPSRSAAPRPPIPPPRKPEQIHTKIPNFAHFSKHNARVEQPAGPSNSKATMREFTVVDSCDTPAGVASASRVSETVRNTVEPTEEDATRGTLSTAGVATTSGGGDTGLREATTCEMTATSSPGGSSGSADQARRPPAEDRKRKGREIEDSDAHCADVDFESGEAKKQTCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPIMFPGIQQYMPTMGMGIGMGMGMEMGMNRPLMPFPNMLAASALPPSAAAAATATATAATAHLGPRFPMPPFHMPHVPPPPDSSRIQPSTPTMNQSDNNNNNNMLPSVVTPDHPNHSRIPNFTDPYHQYLGPHQMHLQFLQNHAMNNPNVSKPSTSKSHEDPENNQPGMNLMPAVS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0783 579 MobiDBLite consensus disorder prediction 146 163 - -
Sto8g0783 579 Pfam Helix-loop-helix DNA-binding domain 344 390 IPR011598 GO:0046983
Sto8g0783 579 Gene3D - 335 398 IPR036638 GO:0046983
Sto8g0783 579 MobiDBLite consensus disorder prediction 475 489 - -
Sto8g0783 579 CDD bHLH_AtPIF_like 340 403 - -
Sto8g0783 579 SMART finulus 346 395 IPR011598 GO:0046983
Sto8g0783 579 MobiDBLite consensus disorder prediction 127 145 - -
Sto8g0783 579 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 570 IPR031066 -
Sto8g0783 579 MobiDBLite consensus disorder prediction 548 579 - -
Sto8g0783 579 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 570 - -
Sto8g0783 579 MobiDBLite consensus disorder prediction 327 341 - -
Sto8g0783 579 MobiDBLite consensus disorder prediction 226 355 - -
Sto8g0783 579 MobiDBLite consensus disorder prediction 124 183 - -
Sto8g0783 579 MobiDBLite consensus disorder prediction 475 532 - -
Sto8g0783 579 MobiDBLite consensus disorder prediction 15 34 - -
Sto8g0783 579 MobiDBLite consensus disorder prediction 166 182 - -
Sto8g0783 579 MobiDBLite consensus disorder prediction 247 290 - -
Sto8g0783 579 MobiDBLite consensus disorder prediction 490 520 - -
Sto8g0783 579 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 404 IPR036638 GO:0046983
Sto8g0783 579 MobiDBLite consensus disorder prediction 295 325 - -
Sto8g0783 579 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0783 Sto-Chr8 4969318 4972253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0783 1 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.184 5.20e-70 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g0783 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0783 - - gmx:100797225 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0783 8 4969318 4972253 Sto13g3342 13 36823324 36830347 CCT
Sto8g0783 8 4969318 4972253 Sto8g0783 8 4969318 4972253 ECH