Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0757 ATGGATGGGTTACCAATTGGCAGGAAGGTTGATTTGAGTTCTCATAGCTCCTATGAAAGCCTAGCACATACTCTGGAGGAGATGTTTAATGAACGGACTGCAGCCAGCACTTGTAAAAGATCCAATGGGGAGGAGCATGGCGTTATACTTGGAGGAGAAAGACAGTCGAAATTGCTGGATGGATCCTCCAAGTTTGTACTCACTTATGAAGACAAGGAGGGAGACTGGATGCTTGTTGGAGATGTACCTTGGGGGTAG 258 0.4651 MDGLPIGRKVDLSSHSSYESLAHTLEEMFNERTAASTCKRSNGEEHGVILGGERQSKLLDGSSKFVLTYEDKEGDWMLVGDVPWG 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0757 85 Pfam AUX/IAA family 1 84 IPR033389 -
Sto8g0757 85 SUPERFAMILY CAD & PB1 domains 1 84 - -
Sto8g0757 85 Gene3D - 1 85 - -
Sto8g0757 85 ProSiteProfiles PB1 domain profile. 1 85 IPR000270 GO:0005515
Sto8g0757 85 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 1 85 - -
Sto8g0757 85 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 85 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0757 Sto-Chr8 4765430 4766123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0757 1 84 B3 DNA Binding Superfamily AT3G61830 35.714 9.61e-09 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto8g0757 AUX_IAA 1.5e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0757 K14484 - gmx:100779400 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0757 8 4765430 4766123 Sto13g3370 13 37053271 37055652 CCT
Sto8g0757 8 4765430 4766123 Sto8g0757 8 4765430 4766123 ECH