Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0743 ATGGAGGACTCTGGGAAGCATAGTAACAGTAAATTTTTGAACCCATGGATGCTTCAGTTCCAAAAAATGGGTCTTGAACTCAAGTGCCCTCTATGCTTAAACTTGTTCAGAAGGCCGATGTTACTGCCATGCAACCACATATTCTGCAATTCCTGCATAGCTGATTGCTCAACTCTTGGCTCAGAATGTGCTGTCTGTAATATTCAATATGCTCAAAGAGATTTAAGGCATTTGCCTTTTGTTGAAAACATGGTTGCAATCTATAAAAGTCTGGATGCTGCCTTTTGTGCCAATCTATTTCAGCAACGTTCTTCTGATGATGTGACTGTAATGGAGCGGGGCCAACCGTTCTTGAATTCTACATTTAGTAATAAAATGACTGAGGAGCCATTCAAAACATCCCTAGGAGATAATCTACATAGTGAGCAGTCAATCTTTTCACAAACAACAAAAGTGCATGTTACAGTTCCCTCAGGTTTATATCATTCTATGGAAGTTGGGATTGGCAAGAATCAGAAATATGATGGGAGTGGTAAAGCTGAGGAGTTTGATATTTCTCAAAAGAAAGGGGTTGATTTTGCTAGTTCAGGAAAGCCAAATCTGGTCAAATGTTTCCAGCTGGATGGAAGGAGCCATCAAGAGTGTGGGGTTGTGGAAATGGACATGAATCAAGTGACTCAATCATCACCTGGCAGCCCTCCATTTTGTGATACTAAAGGCTCTGATAATGACTGCAGTGATCAAGACAGTGAGCATCTCCTGCCTTCTGGGAGATTGGAAAGTACTTCATTGAAGAGAGGAGGTAAAGAAAATGTAGTTTTTGAAAAGAGAACACAATTAAGGTCTGAAAGTTCTGCCTCTGAAACCGAGGGTCTTATGAGAGAGCTCAAGAGACAAAAGAATGATGACATTCAACCTAGTGTAACCCATAAGCCTGTGGCTTCCAGCTGTAACCTGGATCATGATTCTGGAATGGAACCTGACTCATCTACAAATACAGGGATCTGTTCTTTTTGCCAATCTTCTAAAATCTCTGAGGATACTGGGCCAATGTTGCATTATAAAGATGGAAATTCGGTAACAGGAGATGCAGCACACCTTCCAAGTGTTGTTCATGTGCATAGAATGTGCATTGACTGGGCACCGCAAGTGTATTTTGTTGATGAAGTTGTTAAGAATTTGGAGCCAGAAGTGGCAAGGGGAGCAAAGCTTAAATGCAGTAAATGTGGTCTAAAGGGAGCTGCTCTTGGTTGCTTTGTCAGATCCTGTAGAAAAACTTATCATGTTCCTTGTGCAATGGATATCCCAGCTTGCCGTTGGGATGAGGAGGATTTTCTTCTGCTCTGTCCAATTCATTCTCATGTCAAATTTCCATGTGAGAAATCGAAGTCTAGGAAACGGGCCTGTCAGAAGCAACCCGTGTCAACTCATTCGGGATCTCAACAGTCAAATGGCCCGGTAGCATCGTTGAATAGCGGTAAACATTTGGTTTTCTGTGGATCTGCACTGTCTACTGGAGAAAAGATTCATTTGATCAATTTTGCAAGCAGGATTGGTGCTACTGTTACCAAGTTTTGGACCCCAGATGTGACACACGTGATAGCAGCAACTGATGCTGATGGAGCATGCACCAGGACACTGAAAGTTCTTATGGCCATTTTAAAGGGCCAATGGGTTCTTAAAATGGATTGGGTAAATGCAAGCATGGAGGTGATGCATCCTGTGGAAGAAGAGCCATATGAAATTAGTCTTGACAACCATGGGCGTCAAGGTGGCCCAAAAGCTGGCAGACTAAGGGCATTGACCAATGGGTCCAAGCTATTTAGTGGCTTAAATTTGTACTTTTCTGGTGATTACATGCCAGATTATAAGAAGGATCTTGTGGACTTGGTTGTAGCAGGAGGAGGTACTGTTTTGGAAAGCAAGGAAGAATTGGAAGCAGAAAGTAAAAAATGCGAGACTTGCTCAAATCTGATTGTTTACAATCTTGATCCCCCAAGAGGAAGTAGGTTGGGTGATGAAGTTACAATTCTTTGGGAGAGACTAAATGAGGCAGAGGATTTAGCTGCTACCACTGGTTCCCGTGTCATTGGTCACACATGGATTCTGGAATCAATTTCTGGATGTAAATTGCAGCCTTTTATCAGCTAG 2151 0.4231 MEDSGKHSNSKFLNPWMLQFQKMGLELKCPLCLNLFRRPMLLPCNHIFCNSCIADCSTLGSECAVCNIQYAQRDLRHLPFVENMVAIYKSLDAAFCANLFQQRSSDDVTVMERGQPFLNSTFSNKMTEEPFKTSLGDNLHSEQSIFSQTTKVHVTVPSGLYHSMEVGIGKNQKYDGSGKAEEFDISQKKGVDFASSGKPNLVKCFQLDGRSHQECGVVEMDMNQVTQSSPGSPPFCDTKGSDNDCSDQDSEHLLPSGRLESTSLKRGGKENVVFEKRTQLRSESSASETEGLMRELKRQKNDDIQPSVTHKPVASSCNLDHDSGMEPDSSTNTGICSFCQSSKISEDTGPMLHYKDGNSVTGDAAHLPSVVHVHRMCIDWAPQVYFVDEVVKNLEPEVARGAKLKCSKCGLKGAALGCFVRSCRKTYHVPCAMDIPACRWDEEDFLLLCPIHSHVKFPCEKSKSRKRACQKQPVSTHSGSQQSNGPVASLNSGKHLVFCGSALSTGEKIHLINFASRIGATVTKFWTPDVTHVIAATDADGACTRTLKVLMAILKGQWVLKMDWVNASMEVMHPVEEEPYEISLDNHGRQGGPKAGRLRALTNGSKLFSGLNLYFSGDYMPDYKKDLVDLVVAGGGTVLESKEELEAESKKCETCSNLIVYNLDPPRGSRLGDEVTILWERLNEAEDLAATTGSRVIGHTWILESISGCKLQPFIS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0743 716 Pfam BRCA1 C Terminus (BRCT) domain 492 568 IPR001357 -
Sto8g0743 716 SUPERFAMILY BRCT domain 607 714 IPR036420 -
Sto8g0743 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 455 IPR013083 -
Sto8g0743 716 ProSiteProfiles BRCT domain profile. 486 582 IPR001357 -
Sto8g0743 716 ProSiteProfiles BRCT domain profile. 603 716 IPR001357 -
Sto8g0743 716 Gene3D BRCT domain 605 708 IPR036420 -
Sto8g0743 716 SUPERFAMILY BRCT domain 496 583 IPR036420 -
Sto8g0743 716 Pfam RING-type zinc-finger 29 53 IPR027370 -
Sto8g0743 716 SMART BRCT_7 605 709 IPR001357 -
Sto8g0743 716 SMART BRCT_7 488 572 IPR001357 -
Sto8g0743 716 ProSiteProfiles Extended PHD (ePHD) domain profile. 333 453 IPR034732 -
Sto8g0743 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 99 IPR013083 -
Sto8g0743 716 SMART ring_2 29 66 IPR001841 -
Sto8g0743 716 SMART ring_2 406 452 IPR001841 -
Sto8g0743 716 MobiDBLite consensus disorder prediction 224 241 - -
Sto8g0743 716 MobiDBLite consensus disorder prediction 224 263 - -
Sto8g0743 716 CDD BRCT_Bard1_rpt1 496 575 - -
Sto8g0743 716 Gene3D BRCT domain 493 598 IPR036420 -
Sto8g0743 716 SMART PHD_3 405 453 IPR001965 -
Sto8g0743 716 Pfam PHD-like zinc-binding domain 374 452 - -
Sto8g0743 716 ProSiteProfiles Zinc finger RING-type profile. 29 67 IPR001841 -
Sto8g0743 716 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 9 714 IPR031099 GO:0006281|GO:0006974
Sto8g0743 716 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Sto8g0743 716 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 9 714 - -
Sto8g0743 716 SUPERFAMILY RING/U-box 26 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0743 Sto-Chr8 4693355 4698373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0743 526 639 Core DNA Replication Machinery Family AT4G02110 33.613 2.84e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0743 K10683 - gmx:100784883 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0743 8 4693355 4698373 Sto8g0743 8 4693355 4698373 ECH