Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0687 ATGGCGAACCCTCAGAAGCCATGGAAGGCAGAGTACGCGAAGTCCGGACGATCGTCGTGCAAGACTTGCAAGAGCAGCATTGACAAAGAGACGTTCCGCCTTGGCAAGATGGTCCAAGCCACCCAATTTGATGGTTTCATGCCGatGTGGCATCATGCTGCTTGTATACTGAAGAAAGCAAAACAGATAAAATCAACTGATGATGTTGAAGGCTTAGAGTCGCTCCGTTGGGAAGATCAGCAGAAGGTCAGAAAATACGTAGAGAGTGCTGAGCAGATAAAGTCAAATTCTACCAAAGATATTGAATATGGCATTGAAGTTTCACAAACTGCTCGTGCTACATTTTGTAAGCTTATTGACCTTGGTGGGATTTTGGTGTGCAAACGAGATGATAAGCAAAGGCATATGCTTATAGTTCAGATTGATTATTCTAATCTTACCTTGTTCTTGTTTATCACAAAAGTTCGCATATCTAGTAAGCCTGATGGTCAAGGTGCTAAAGGACTGGCTTGGCACCATGCCAAGTGTCTCATGGAATTATTCCCCTCACTACAGGTGGAAAAGTTGCCTGGATGGAATAGTCTCTCACCTTCTGATCAATCATCAGTCAGTGCCACAGCTAAGAAGAGAGGTGTTGCTGGTAATGAGGCTCAAGAGGTTAAGGAAGCCACATGTGAATCGACTTCCAAAGCTGGCATGAAACGTAGGAAGGATGCCAGTGGTGACCTGAAGTCAAAAGTTGCTAAGACTGAGGGAGATGTGTCTGAGGGCAGAGCATCATCAGTTAAAAATGGTAATGACTCAAGGAAAGCATCTGATATGGAGAAAAGACTGGAGATCCAGACCAAAGAGCTCTGGGATCTGAAAGATGATCTTAAAAAGCATGTGACAACTGCTGAGTTACGTGTAATGCTGGAAACTAATGGTCAAGATTCAACAGGATCAGAACTTGATTTGCGAGACCGCTGTGCTGATGGAATGATGTTTGGACCACTTGGTTCTTGCCCAATATGTTCTGGCTGTCTCCGTTATTCTGGAGGAATGTATCGTTGCCATGGATATGTTTCTGCTTGGAGCAAATGTTCCTACTCTATCAGTGAACCAATACGTCTTAGACAGAAGTGGAAAGTTCCAGAGGGAACAAACAATCAGTACCTTAAAAAGTGGTTCAAATCACAAAAGGCTGAGAGACCTGTTAGGATAGTGCCTCCACAGTCATCAACTTCTGGAAGTCAAATAGTTGCTTGCCAGCATCAATTGGCATACAGTGAAAGTTTGGGAGAACTGAGAGTTGCTATAGCAGGACCTAAAGAATCTATTGCTGAGTGGAAATGCAAAGTTGAGGGGGTTGGTGGTGTGCTTCATGCAAAAGTAAAGAAAGATACTAATTGCTTGGTGGTGATTGGAGCGTTGGATGGTCAAGAAGCTGAGATGCGGAAGGCAAAGAGGATGAAAGTACCTATAGTCAGAGAGGATTATCTAGTTGATTGtatggaaagaaagaagaagcttCCATTGGATTTGTATAAAGTTGAAGCAACTAGTGAGACCTCTAGCATGGTCACTGTCAAAGTGAAGGGTCGAAGTGCTGTTCATGAGGCCTCTGGCCTACAGGATTCTGGCCACATACTTGAGGAAGGGAAAAGCATATTTAATACAACTTTGAATATGTCTGATTTATCTTCTGGTGTAAACAGATACTATTCAAATAAAAGTAGGGTGTATAACTCCACTGGCTTGTCTGGAAGCTACTACATTCTCCAAATAATCCAAGAAGACAAGGGATCAAATTGCCATGTATTTCGTAAATGGGGTCGTGTAGGGAATGACAAGATTGGAGGAAATAAACTGGAAAACTTGTCAAAAGCAGATGCAATAGCTGAGTTCAAACGATTATTCTTTGAGAAGACTGGAAACCCTTGGGAGGCTTGGGAACAAAAGGATTTTCAGAAGCAACCAGGAAGATTCTTCCCATTGGATATTGATTATGGAGTTAACAAACAGGTAtcaaagaaaaatcaaaatgatGCGGATAGTAAACTGGCCCCTCCATTAATAGAATTGATGAAGATGCTTTTTAATGTGGAAACATACAGAGCTGCCATGATGGAGTTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGTAATATCCAAAAGGGGTTTGAAGCTTTAACAGAGATACAAAATCTGTTAAATTCCCATAATCCTGATCCTTCAGTCAGAGAAAGCTTGCTTATTGATGCCAGCAATCGGTTTTTCACTGTGATCCCTTCTATTCATCCACATATTATTAGGGATGAAGAAGATTTTAAGTCAAAGGTGAAAATGTTAGAGTCCCTTCAAGACATTGAAATAGCTTCAAGATTAGTTGGTTTTGATGTTGATAGTGATGACTCCATTGATGATAAGTATAAGAAGCTCCATTGTGATATTTCTCCACTTCCTCATGATAGTGAAGATTATCGTCTGATCGAGAAGTTTCTCCATACTACTCATGCCCCTACGCATACGGATTGGAGTCTTGAGCTGGAAGAAGTTTTTTCACTTGAAAGGGAAGGCGAATTTGATAAGTATGCCCCTCACAGAGAAAAACTTGGTAACAGAATGCTGCTATGGCATGGTTCTAGGTTGACAAATTTTGTGGGCATACTTAACCAAGGTTTGAGAATTGCGCCTCCTGAAGCCCCGGCAACTGGCTATATGTTTGGCAAAGGGATATACTTTGCTGACCTTGTCAGCAAGAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCCGTTGGTCTGATGCTTCTGAGTGAAGTTGCCTTAGGAAACATCTATGAGCTCAAAAATGCTAAGTATATGGACAAACCTCCTAACGGAAAGCATTCTACCAAAGGACTGGGCAAGAAAATACCTAATGATTCAGAATTTGTAAAGTGGAGGGATGATGTCACTGTTCCCTGTGGCAAACCAGTGCAATCAAAAGTCAAGACTTCTGAGCTTATGTACAACGAGTATATTGTTTATAATACTGCTCAGGTTAAGATGCAGTTCTTGTTGAAGGTCgttccttctcttcctccaCTGGAAACCCACAACACAGCTGGTCTTATGTGTCACTATATTGGTAATGGAGGGTCTCCGTCTCCATGCGGGGCATGCAAGTTCCTGAGAAGAAAGTGTGGAGTTGAATGCATATTCGCACCATATTTCTGTTCGGAGCAGGGGCCAGCAAGATTTGCAGCGATTCACAAGGTGTTTGGGGCAAGTAATGTTTCCAAATTGCTACTTCATATTCCAGCTCAAGATCGCTCCGAGGCTGTCCTCACCATCGCCTATGAAGCTCAGGCTCGTATTCGAGACCCTGTTTATGGCTGTCGCATGCTTGCAAGCACAACTTATGCAACTGAAGGCTCAGCTCGCGCACAAGAGCTTTGA 3438 0.4174 MANPQKPWKAEYAKSGRSSCKTCKSSIDKETFRLGKMVQATQFDGFMPMWHHAACILKKAKQIKSTDDVEGLESLRWEDQQKVRKYVESAEQIKSNSTKDIEYGIEVSQTARATFCKLIDLGGILVCKRDDKQRHMLIVQIDYSNLTLFLFITKVRISSKPDGQGAKGLAWHHAKCLMELFPSLQVEKLPGWNSLSPSDQSSVSATAKKRGVAGNEAQEVKEATCESTSKAGMKRRKDASGDLKSKVAKTEGDVSEGRASSVKNGNDSRKASDMEKRLEIQTKELWDLKDDLKKHVTTAELRVMLETNGQDSTGSELDLRDRCADGMMFGPLGSCPICSGCLRYSGGMYRCHGYVSAWSKCSYSISEPIRLRQKWKVPEGTNNQYLKKWFKSQKAERPVRIVPPQSSTSGSQIVACQHQLAYSESLGELRVAIAGPKESIAEWKCKVEGVGGVLHAKVKKDTNCLVVIGALDGQEAEMRKAKRMKVPIVREDYLVDCMERKKKLPLDLYKVEATSETSSMVTVKVKGRSAVHEASGLQDSGHILEEGKSIFNTTLNMSDLSSGVNRYYSNKSRVYNSTGLSGSYYILQIIQEDKGSNCHVFRKWGRVGNDKIGGNKLENLSKADAIAEFKRLFFEKTGNPWEAWEQKDFQKQPGRFFPLDIDYGVNKQVSKKNQNDADSKLAPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLLNSHNPDPSVRESLLIDASNRFFTVIPSIHPHIIRDEEDFKSKVKMLESLQDIEIASRLVGFDVDSDDSIDDKYKKLHCDISPLPHDSEDYRLIEKFLHTTHAPTHTDWSLELEEVFSLEREGEFDKYAPHREKLGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGNIYELKNAKYMDKPPNGKHSTKGLGKKIPNDSEFVKWRDDVTVPCGKPVQSKVKTSELMYNEYIVYNTAQVKMQFLLKVVPSLPPLETHNTAGLMCHYIGNGGSPSPCGACKFLRRKCGVECIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAQDRSEAVLTIAYEAQARIRDPVYGCRMLASTTYATEGSARAQEL 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0687 1145 MobiDBLite consensus disorder prediction 228 253 - -
Sto8g0687 1145 Pfam Poly(ADP-ribose) polymerase, regulatory domain 679 809 IPR004102 GO:0003950
Sto8g0687 1145 ProSitePatterns Poly(ADP-ribose) polymerase zinc finger domain signature. 20 55 IPR001510 GO:0003677|GO:0008270
Sto8g0687 1145 Pfam PADR1 (NUC008) domain 321 370 IPR012982 -
Sto8g0687 1145 CDD parp_like 679 1022 - -
Sto8g0687 1145 Coils Coil 271 291 - -
Sto8g0687 1145 PANTHER DNA LIGASE 48 1022 - -
Sto8g0687 1145 SMART BRCT_7 424 501 IPR001357 -
Sto8g0687 1145 ProSiteProfiles BRCT domain profile. 447 511 IPR001357 -
Sto8g0687 1145 Gene3D BRCT domain 420 520 IPR036420 -
Sto8g0687 1145 ProSiteProfiles WGR domain profile. 540 656 IPR008893 -
Sto8g0687 1145 SUPERFAMILY ADP-ribosylation 812 1022 - -
Sto8g0687 1145 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 679 813 IPR036616 GO:0003950
Sto8g0687 1145 SMART WGR_cls 551 651 IPR008893 -
Sto8g0687 1145 MobiDBLite consensus disorder prediction 195 274 - -
Sto8g0687 1145 SMART PADR1_2 319 372 IPR012982 -
Sto8g0687 1145 SMART zf_PARP_3 11 88 IPR001510 GO:0003677|GO:0008270
Sto8g0687 1145 SMART zf_PARP_3 106 208 IPR001510 GO:0003677|GO:0008270
Sto8g0687 1145 Gene3D - 668 812 IPR036616 GO:0003950
Sto8g0687 1145 ProSiteProfiles PARP catalytic domain profile. 803 1031 IPR012317 GO:0003950
Sto8g0687 1145 Gene3D - 331 391 IPR038650 -
Sto8g0687 1145 Pfam Lateral organ boundaries (LOB) domain 1050 1132 IPR004883 -
Sto8g0687 1145 Pfam WGR domain 581 646 IPR008893 -
Sto8g0687 1145 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 48 1022 - -
Sto8g0687 1145 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 91 - -
Sto8g0687 1145 SUPERFAMILY BRCT domain 438 511 IPR036420 -
Sto8g0687 1145 Pfam Poly(ADP-ribose) polymerase catalytic domain 823 1022 IPR012317 GO:0003950
Sto8g0687 1145 Gene3D - 2 96 IPR036957 GO:0003677|GO:0008270
Sto8g0687 1145 Gene3D - 97 231 IPR036957 GO:0003677|GO:0008270
Sto8g0687 1145 Gene3D - 813 1024 - -
Sto8g0687 1145 ProSiteProfiles LOB domain profile. 1049 1145 IPR004883 -
Sto8g0687 1145 ProSiteProfiles PARP alpha-helical domain profile. 678 796 IPR004102 GO:0003950
Sto8g0687 1145 SUPERFAMILY WGR domain-like 518 661 IPR036930 -
Sto8g0687 1145 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 8 91 IPR001510 GO:0003677|GO:0008270
Sto8g0687 1145 Gene3D - 258 330 - -
Sto8g0687 1145 CDD WGR_PARP1_like 541 663 - -
Sto8g0687 1145 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 11 87 IPR001510 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0687 Sto-Chr8 4276946 4289125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0687 1043 1126 AS2 family AT2G42430 79.310 8.79e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto8g0687 PARP 4.5e-73 CL0084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0687 K24070 - gmx:100815900 1502.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0687 8 4276946 4289125 Sto13g3432 13 37427475 37428299 CCT
Sto8g0687 8 4276946 4289125 Sto8g0687 8 4276946 4289125 ECH