Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0645 ATGTTTTCTGGAGCCATGTCCAATTCTACTACTTCTTTGTCCCAAGAACGAcccactactactactactactagaCTTTACGACCTCAGTACTGGATTAAATCCTCTCCTCCCAACTACTCCTATTCCTCCTCCTCACCAACCTCAGAAGATCAAGAAGAAAAGAAGCCTCCCAGGAAACCCAGaCCCAGATGCAGAAGTGATAGCGTTGTCCCCAAAGACACTGTTGGCGACGAACAGGTTTGTGTGTGAGATCTGCAATAAGGGTTTCCAGAGAGACCAGAACCTTCAACTTCACAGGAGAGGGCACAACCTGCCATGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAGAAGAGAGCTTATGTGTGCCCAGAGGCTTCATGCGTTCATCACAACCCAGCAAGGGCTTTGGGAGATCTCACTGGGATTAAGAAACATTACTGCAGGAAACACGGAGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGATCTACGCTGTTCACTCTGATTGGAAGGCTCACTCTAAAACATGTGGAACTAGAGAATATAGATGCGATTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATAACTCACAGGGCATTCTGTGATGCATTGGCCGAAGAAAGTGCAAGAGTTTCAGCAAACCAACTAATAGGTGGCTGCAATACCACAAACCCACTGGTCCAATCCCTCTTCCTTTTCCCAAACCCATGGGACCCATCTCCTcctcaaaaccctaaccctctcCACCACCCCATCAAGCCTGAATCCCACCATTTCAACAACCTCCCCACCCTTCCCCCTCCCTCTCCATCTCCCTCATTCCTCACAAACTCACTAGTACCCTTCCCCAACCTCCACgtcaccacctcctcctcctcctccattcatcctgccacgtcaccccacctCTCCGCCACCGCCCTCCTCCAAAAAGCTGCCACCGTTGGTGCCCATCCCTCCGATGACTTTGGAGCCCTCCACTCCGTGGTGGCGCCGCCGGACTACACCTCGGGCTTTACCACTAGGACTAGTCTTAAGAGTGAGCATTTGACTAGAGACTTTCTGGGCCTCACCGGCGACGCCCATAGCCGCCCCGCAGACGGCGATGTGATGACATTCACGGGGGACATGTACCAGCAACAGCACCATTCCCTCTTCAAGTCCCGACAAGCTTTCGGATTCGTTGGGACTACCACTGCTCCGGAGACGTGGGGCAATTATTGA 1236 0.4757 MFSGAMSNSTTSLSQERPTTTTTTRLYDLSTGLNPLLPTTPIPPPHQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEASCVHHNPARALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARVSANQLIGGCNTTNPLVQSLFLFPNPWDPSPPQNPNPLHHPIKPESHHFNNLPTLPPPSPSPSFLTNSLVPFPNLHVTTSSSSSIHPATSPHLSATALLQKAATVGAHPSDDFGALHSVVAPPDYTSGFTTRTSLKSEHLTRDFLGLTGDAHSRPADGDVMTFTGDMYQQQHHSLFKSRQAFGFVGTTTAPETWGNY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0645 411 Gene3D Classic Zinc Finger 77 104 - -
Sto8g0645 411 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Sto8g0645 411 SUPERFAMILY beta-beta-alpha zinc fingers 80 177 IPR036236 -
Sto8g0645 411 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 10 323 - -
Sto8g0645 411 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 323 - -
Sto8g0645 411 MobiDBLite consensus disorder prediction 1 36 - -
Sto8g0645 411 Gene3D Classic Zinc Finger 114 205 - -
Sto8g0645 411 SMART c2h2final6 122 152 IPR013087 -
Sto8g0645 411 SMART c2h2final6 81 103 IPR013087 -
Sto8g0645 411 SMART c2h2final6 157 177 IPR013087 -
Sto8g0645 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Sto8g0645 411 MobiDBLite consensus disorder prediction 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0645 Sto-Chr8 3968449 3971627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0645 47 400 IDZ Gene Family AT4G02670 51.795 7.53e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g0645 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0645 K25870 - gmx:100780056 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0645 8 3968449 3971627 Sto13g3880 13 40044081 40046814 CCT