Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0615 ATGAAAGCGGCGCTGAAATTTTGGAAGCGATTCCGGAAGCAGGACAAAGACAATGTTTCTGAAGGAGAGCCGTTAAACTTGACATTTGAGGATAAGGAAGTGGAGCCAACCATACAAAAAGAATGTGACTTGGAATCGGAAATGCTTAAGAGTGGAAATGTTGGGTTAGTTGAGAATGAGAACAGAAAAAGTAGTTTAAGCCCCGATGATAACATTGAAGGAGTTGACATTGAGATGGAGGTGAAGAAGATGCAGGATTCGAATGATAGAGTGCAAAATGGTGGTCGAGTACTGCGCTCAATGTCAAAGAGAACAGACAGTAATATATCTGATAATGGTGAAGTCGATAGGGAGTTGGGAGGGAAAAATATAGAGCTTGAACATGACCAGTTTGAGAGGAATAAGGGTAAGGGAGAAAAGGAAGAAGGTGGTGAATTTGTCAGAAAGGAGTTGAAACAGAAGCAGCGTGGGAGGCCCCCCAAATTGAGGGTGGAAGAGCAAGATCAATTAGTTGGTGATACGCAACAAAAGTATGGAAGGCCCCAAAATATGACAGAAGAGCAAGATCTATTAGTTTGGGAAAAGCTGAAACCGAAGCATGGAAGGGCCCCCAAAAAGAAGATGGAAGAGCAAGAtcaattagctagggaaaagcTGAAACGGAAGCGTGGAAGGCCTCCAAAAATGAAGATGGAAGAGCAAGAtcaattagctagggaaaaactAAAATGGAAGCATGGAAGGCCCCCCATAATGAAGATGGAAGAGAAAGATCATTTGGTTAGGGAAAAACTAAAACGGAAGCGTGGAAGGCCTCCCAAGGCTGAGCAAAATTTTAATCTCTTGAAATTAGCACATAATATAAACGGAAAGGTGGGCTTTCAAAAAGGTgagaaatgtttaactatgagAGATGATACGAATATGAATGCAACTGATATGTCCTCAAAAAGGAGATCTTCTGTGAGAGTGTTGAGAAAGAAGAAATTTTCTCCTTTACAGAAGAGTGATTTTGGAAACCTTTTGGAAATTGATAACAGTAAGGTGGCATCACCATTGAGATCAAATTCTGTGAATTCTCTTACTGCGAAGAAAGTTGGAATAAATAAAGTGAAGCAGTCAGTGAAGAAAAACATTATGGAGCTGCTCTCGGCTGCAGGCTGGATTGTTGACTACAGACCTAGGCATGGCAGAGAATATAATGATGCAGTGTATATTAGTCCAGATGGAAAGACTCACTGGTCAATTACCTTGGCCTATAAAAGGCTTAAAGAGCATTCTGAAGCTGGTAATGGTGAAGGTAAGGTGTATAGGCCAGGATTCAAATTTTCCCCAATACCAATGAAGGATTTCAAAATACTAACTAAGGTCATGAAAGAGAAAAGGAGAAGTAAAGGGGAGTTGAAGcaagtgaaaaaagaaaaattaagttcTGTTTCAGGCTTCAGTAAATCAATGAAGGGGAAAACGCAGAGGAAATTCTCACTTGTTGAGGAGGACAATCCAGATGCTACATCACATAAAAGGTTTCCTGCTTTGGTCAAGGATCTCAAGAAACAGaaaacacaaaacaagaagCGATGTGCTTTGTTGGTTCGCACTGCTGAAGAGGAGATGAATTCGGAAATTAATGGATATGTACCTTACCATGGGAAGCAAACTGTGCTTGCCTGGATGATTGGTTTGGGAACAGTCCTGCAAAATGGGAAGGTACATTATATGAACCGCCGAAGAAAAGGTGCAAAACTGGAGGGTCGGATAACTGGGGATGGAATTCATTGTGACTGCTGTAATGAAATTGTAACAATATCAGAATTTGAAGTCCATGCAGGAAGCAAACTCTCTGATCCACTAAAAAACATTTATACAGAGAGAAGGATTTCCCTTTTTCAATGCCTGCTAGACTCCTggaataaacaaaatgaatctGAAAGAGAACATTTCCATTTCATCAATACTACGGATGAAGACCCTAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGACGGATGCCCATCAGCATTCCACCAAAGCTGCCTAAATATtggaAAGTTTCCATCGGGTGACTGGTACTGTATTTATTGCTGTTGCAAATTTTGTGGGTTGGTTGGTCAAAGTACAAACCAAAGGGATGGCTATGATGACTTTACTTCATGTGCTTTACATAAGTGCCGTTTATGCGGGCAAAAAtATCACAGATCCTGCATTGAGGCAAATGTGGTCAAGGCTGATGATTCCAGCGTTACATTTTATTGTGGAAACAGATGTCAGGAGTTATCTGAGAGACTTGGAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGACTTTTATTAACCGGTCAGGTGTTTGCTCGGATGTGTCTCAGATAGAAACCCAGATGGTTGAATGTAATTCCAAGCTAGCTGTTGCATTATCTGTAATGGATGAGTGCTTCTTACCTTATATTGATCATAGAAGTGGGATTAATCTGATCCACAGTGTCGTTTATAATCGTGGGTCAAACTTCAATCGCCTGAACTACAGCGGTTTTCTTACTGCAATTCTAGAGAGAGGTGATGAAGTCATATCTGCTGCATCCATTAGgATCCACGGGAATCAACTAGCAGAAATGCCATTTATTGGGACCCGCTATATGTATAGGAGACAGGGAATGTGCCGCAGGCTTCTAAATGCCATTGAATTGGCTCTCAGCTCTCTGAATGTTGAGTTATTGGTCATACCAGCAATCTCAGAACTCAAAGAAACATGGACTTCTGTTTTTGGGTTTGAGCCGCTTGAAGTGACAAGGAAGCAAATGATAAAGAACCTCAATCTGTTAGTCTTCCCTCGTGTAGATATGTTGCAGAAGGAGATAGCGAAGCCAAAAGTTGCTGATGAAAACCTGATTTCTACTGTAAATACACAGGATTATGTAAGCCATGTTCACTGCCAAGCTGAAGAGATAAATATGGGTCAGAATGCTGAATCTGGTTGCATCATCCTGGCTCATGTGGAGAAGACAGTAGATTTAGATAACCCACTGCAAAATTGCCATGCTTCTGAAGATTGCCCATCCATAAAGGTAGCTTTGGAATCCGGGGAGGGTATTGTGAATGGTGAGAATGGGATGTGTAAAGCAGCCGGTGCAGCTGATAGGAATTCAGATGTTAATGATAAGCTTTGTATGAAGAATTCTTCAGAGCTACCTGAGCTTGATTTACAGATTGATCAAACTGCACGGACTAATGCTCCATCCTTGTGTAGCCCAAACACTGGCGCTGGCGTGGCTCTTCATTGCGCAGCTGCTAGTGAACACAGGGCATCTAGTAGAGTGCATTTTGGAAGGTTGGATCGCATATTAGCAATTTTTGGTCTGttaCTTGTATTCAGAAAGGAAGGAGATGAAAAGATGGTTGTTAGAGAAGTAGGGCAACCTTTCCTTCAAATTAATGTCTGTAGCTCCGGACGCGCCTCCACCATCTCCTGCATCGACCGTCGGAAGTCCAAATATGGATCCGGCGAGTACGTCGGCACTGCCACGCTATTGTCGAagagctgctgctgctgctggtgGCTGTGGCGATGGGTGGCGGCGGCAGATTCAACGATGGAGTTGGAGCGGCCaggggaagagaagaagaagcggCGGGAGGCGAAGGCGGTGGCCAACTCTGCTTCAATTGGAATATTGGTGGCGTCGGAGTCCCACACACAACACGAGGATCCCGACTTGTCTTTCTCACTGTCGTTAATATCGTAG 3774 0.4091 MKAALKFWKRFRKQDKDNVSEGEPLNLTFEDKEVEPTIQKECDLESEMLKSGNVGLVENENRKSSLSPDDNIEGVDIEMEVKKMQDSNDRVQNGGRVLRSMSKRTDSNISDNGEVDRELGGKNIELEHDQFERNKGKGEKEEGGEFVRKELKQKQRGRPPKLRVEEQDQLVGDTQQKYGRPQNMTEEQDLLVWEKLKPKHGRAPKKKMEEQDQLAREKLKRKRGRPPKMKMEEQDQLAREKLKWKHGRPPIMKMEEKDHLVREKLKRKRGRPPKAEQNFNLLKLAHNINGKVGFQKGEKCLTMRDDTNMNATDMSSKRRSSVRVLRKKKFSPLQKSDFGNLLEIDNSKVASPLRSNSVNSLTAKKVGINKVKQSVKKNIMELLSAAGWIVDYRPRHGREYNDAVYISPDGKTHWSITLAYKRLKEHSEAGNGEGKVYRPGFKFSPIPMKDFKILTKVMKEKRRSKGELKQVKKEKLSSVSGFSKSMKGKTQRKFSLVEEDNPDATSHKRFPALVKDLKKQKTQNKKRCALLVRTAEEEMNSEINGYVPYHGKQTVLAWMIGLGTVLQNGKVHYMNRRRKGAKLEGRITGDGIHCDCCNEIVTISEFEVHAGSKLSDPLKNIYTERRISLFQCLLDSWNKQNESEREHFHFINTTDEDPNDDTCGVCGDGGDLICCDGCPSAFHQSCLNIGKFPSGDWYCIYCCCKFCGLVGQSTNQRDGYDDFTSCALHKCRLCGQKYHRSCIEANVVKADDSSVTFYCGNRCQELSERLGMLLGVKHEIEDGFSWTFINRSGVCSDVSQIETQMVECNSKLAVALSVMDECFLPYIDHRSGINLIHSVVYNRGSNFNRLNYSGFLTAILERGDEVISAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIELALSSLNVELLVIPAISELKETWTSVFGFEPLEVTRKQMIKNLNLLVFPRVDMLQKEIAKPKVADENLISTVNTQDYVSHVHCQAEEINMGQNAESGCIILAHVEKTVDLDNPLQNCHASEDCPSIKVALESGEGIVNGENGMCKAAGAADRNSDVNDKLCMKNSSELPELDLQIDQTARTNAPSLCSPNTGAGVALHCAAASEHRASSRVHFGRLDRILAIFGLLLVFRKEGDEKMVVREVGQPFLQINVCSSGRASTISCIDRRKSKYGSGEYVGTATLLSKSCCCCWWLWRWVAAADSTMELERPGEEKKKRREAKAVANSASIGILVASESHTQHEDPDLSFSLSLIS 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0615 1257 ProSitePatterns Zinc finger PHD-type signature. 663 702 IPR019786 -
Sto8g0615 1257 SMART PHD_3 704 764 IPR001965 -
Sto8g0615 1257 SMART PHD_3 662 703 IPR001965 -
Sto8g0615 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 722 IPR013083 -
Sto8g0615 1257 MobiDBLite consensus disorder prediction 53 185 - -
Sto8g0615 1257 MobiDBLite consensus disorder prediction 109 170 - -
Sto8g0615 1257 PANTHER PHD FINGER PROTEIN 12 37 1092 IPR042163 GO:0003714|GO:0045892
Sto8g0615 1257 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 37 1092 - -
Sto8g0615 1257 Coils Coil 454 474 - -
Sto8g0615 1257 MobiDBLite consensus disorder prediction 1238 1257 - -
Sto8g0615 1257 MobiDBLite consensus disorder prediction 197 237 - -
Sto8g0615 1257 MobiDBLite consensus disorder prediction 63 89 - -
Sto8g0615 1257 MobiDBLite consensus disorder prediction 90 108 - -
Sto8g0615 1257 SUPERFAMILY FYVE/PHD zinc finger 654 708 IPR011011 -
Sto8g0615 1257 SMART AT_hook_2 153 165 IPR017956 GO:0003677
Sto8g0615 1257 SMART AT_hook_2 220 232 IPR017956 GO:0003677
Sto8g0615 1257 SMART AT_hook_2 266 278 IPR017956 GO:0003677
Sto8g0615 1257 PRINTS AT-hook-like domain signature 153 163 IPR017956 GO:0003677
Sto8g0615 1257 PRINTS AT-hook-like domain signature 218 229 IPR017956 GO:0003677
Sto8g0615 1257 PRINTS AT-hook-like domain signature 264 274 IPR017956 GO:0003677
Sto8g0615 1257 MobiDBLite consensus disorder prediction 197 219 - -
Sto8g0615 1257 CDD PHD1_AIRE 663 702 - -
Sto8g0615 1257 Pfam Tify domain binding domain 585 634 IPR032308 -
Sto8g0615 1257 ProSiteProfiles Zinc finger PHD-type profile. 660 705 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0615 Sto-Chr8 3787535 3796318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0615 218 1011 PHD Transcription Factor Family AT5G36670 39.474 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0615 - - lang:109346644 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0615 8 3787535 3796318 Sto13g3518 13 37920040 37930985 CCT
Sto8g0615 8 3787535 3796318 Sto8g0615 8 3787535 3796318 ECH