Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0583 ATGATCCGAAAACTATTCACCTTGGGATTAATGGAAGGACAAAGCAACCAGGACAACCCTGCGCAGACGACGCCGTTTAACTCTGGAGGAACTAGCAATCATGTGAGTCATTCAGCTGAGGATGTTGCTGCAGCTGGTGGAAAGAATGGGATTGAGAACCACTGGACTTACCTTCCGGAACCATTTCATAATTACGCTGAGTATCTCACCGAAATCTCAACTTATCTTCCAAACACTACAACCCAAAATGTGCTTGGGAGCTGTTATTCACCTGTTGGCACCTTACACAATGGAACAATCAGAAACTTCTCTTACAATGATCCTGGAAAATCTTGCCGTTTCAAGCTTCCCGATTCTTCTACTGACATAGACTTTAAGAAGGTGAGTTTCCGGAGGTCGGGTAATGAAGGTGACCAAGCAATGAAATTTGCTAGCAGCCAGCATGATCTTCATGCTAAGAGTCATGCTTCGTGGACTCCAGAATCATCAACTGGAAATAAACAATCTGTTTCACGACTTGACCCCAGGCTAACAGTTGATGCATCTGGTTTCCTTCTCAAACCACGATGTAGTTCATCAAAACAAAAAGCCAGTGTCACTGATCGTCAACGCAGGCAACGTATTGCTGATAACTTCAAAGCCTTGCACAACCTGCTACCAACTCCAACAGAGGGTAGTCAAGCATATATAGTGGATGATGTCATTGACTATGTCAAATATCTGCAGCTTCAGATTAAGGAATTAAGTGGAAGCAGATTGCAAGGTGATTCAACCGGTATGCAACTGTTTTTCCGCGAGGGTTACGGCCACTATATTAACCAACAGATGCTGAATGATCCACTAGAGGAGGTGATGGGAAAACTACTAGGGGAACATCCAGCAGCTGCGGCTCAACTGTTAGAGAGTAAGGGCCTTTTTCTACTGCCCGTGGCTTTGGTTGAGGACTTACGCCAAGCTATGCAGATGTTCGGCGGGATTCCGCGCGTctaa 990 0.4515 MIRKLFTLGLMEGQSNQDNPAQTTPFNSGGTSNHVSHSAEDVAAAGGKNGIENHWTYLPEPFHNYAEYLTEISTYLPNTTTQNVLGSCYSPVGTLHNGTIRNFSYNDPGKSCRFKLPDSSTDIDFKKVSFRRSGNEGDQAMKFASSQHDLHAKSHASWTPESSTGNKQSVSRLDPRLTVDASGFLLKPRCSSSKQKASVTDRQRRQRIADNFKALHNLLPTPTEGSQAYIVDDVIDYVKYLQLQIKELSGSRLQGDSTGMQLFFREGYGHYINQQMLNDPLEEVMGKLLGEHPAAAAQLLESKGLFLLPVALVEDLRQAMQMFGGIPRV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0583 329 SMART finulus 198 247 IPR011598 GO:0046983
Sto8g0583 329 CDD bHLH_AtbHLH_like 198 249 IPR045239 -
Sto8g0583 329 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 28 313 - -
Sto8g0583 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 254 IPR036638 GO:0046983
Sto8g0583 329 MobiDBLite consensus disorder prediction 12 36 - -
Sto8g0583 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 241 IPR011598 GO:0046983
Sto8g0583 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 313 - -
Sto8g0583 329 Gene3D - 191 258 IPR036638 GO:0046983
Sto8g0583 329 Pfam Helix-loop-helix DNA-binding domain 194 242 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0583 Sto-Chr8 3574654 3577726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0583 187 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 34.532 3.44e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g0583 HLH 6.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0583 - - gmx:100788949 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0583 8 3574654 3577726 Sto8g0583 8 3574654 3577726 ECH