Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0581 ATGACCATCTCAATGGCAATGTGGACACCAACGCAACCACTAATAAACATTTCCTCCTCTGGCCCAAAAATAAACGTGACTACTCTTCCACGGCAGAAGGAGAAGGTGGTGTTGGTCTTGGGAGCCACCGGCACCGGAAAAACCAGGCTCTCCATCGACCTTGCCACCCTTTTTCCGGCCGAGATCATCAACTCCGACAAAATTCAAGTCTACGAAGGGCTCGACATAGTCACCAACAAGATCACCAAGGAAGAGCAGCGTACAGTGCCTCACCATTTGCTAGGAACACAGAACCCTAACTCGGAATTCAGCGCCGCCAATTTCTGCGACAAGGCTTCACTGGCCATTGAGACAATCACCAGCCGAGGCAAGCTTCCGATCATCGTCGGAGGCTCCAATTCGTACGTCGAAGCTTTAATCGACGACGACGACTATAAATTCCGATCGAGGTACGATCTGTGTTGCCTGTGGGTAGACGTATCGATGCCGGTTCTTCGTTCGTATGTAGCAGAACGGGTGGATCAAATGCTGGAGAAGGGAATGGTGGAAGAATTGAGACCATTCTTCAATCCAAACGGAGATTACTCGCGAGGGATTAGAAAAGCAATCGGAGTTCCGGAATTCGACAAGTATTTCCGAAGCGAAGGATTGGCGGATGAAGAAACGAGGGAGAGGCTGCTGGAAGAAGCGGTTAGGGAAATGAAGGAGAACACGTGGAAATTGGCGGGAAAACAGTTGGGGAAAATTCAGAGGCTGAGGAACGTGAAGAGGTGGAAGACGCAGCGCGTGGATGCCACGCCGGTGTTTCGGAAGCGTGGGGAATTGCAAGAGGCGAATGAGGCGTGGAGGAAGGCGGTGGCAGAACCAAGTGTAATGATCGTCGCGCAATTTCTTCACAACTTGAAGACTAGTAATGACATCAGCAATCTATCATTGGCCTCCACCCTCCAGAATGCCATTGCTTCCTCACCTCCTCTTCAATCCATGGATTGGGGGCACATTCCTGCCCTCTATGACAGGATTTGTGCCGATGCGCTTCCATCCTTAAAGTAG 1053 0.5081 MTISMAMWTPTQPLINISSSGPKINVTTLPRQKEKVVLVLGATGTGKTRLSIDLATLFPAEIINSDKIQVYEGLDIVTNKITKEEQRTVPHHLLGTQNPNSEFSAANFCDKASLAIETITSRGKLPIIVGGSNSYVEALIDDDDYKFRSRYDLCCLWVDVSMPVLRSYVAERVDQMLEKGMVEELRPFFNPNGDYSRGIRKAIGVPEFDKYFRSEGLADEETRERLLEEAVREMKENTWKLAGKQLGKIQRLRNVKRWKTQRVDATPVFRKRGELQEANEAWRKAVAEPSVMIVAQFLHNLKTSNDISNLSLASTLQNAIASSPPLQSMDWGHIPALYDRICADALPSLK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0581 350 Pfam IPP transferase 69 142 - -
Sto8g0581 350 Pfam IPP transferase 147 246 - -
Sto8g0581 350 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 27 305 - -
Sto8g0581 350 Gene3D - 33 298 IPR027417 -
Sto8g0581 350 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Sto8g0581 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 143 IPR027417 -
Sto8g0581 350 Coils Coil 217 237 - -
Sto8g0581 350 Hamap tRNA dimethylallyltransferase [miaA]. 36 277 IPR018022 GO:0008033
Sto8g0581 350 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 27 305 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0581 Sto-Chr8 3560887 3562950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0581 149 298 C2H2 Transcription Factor Family AT2G27760 31.638 1.71e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0581 K10760 - gmx:100803964 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0581 8 3560887 3562950 Sto13g3540 13 38088097 38089074 CCT
Sto8g0581 8 3560887 3562950 Sto8g0581 8 3560887 3562950 ECH