Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0566 ATGGCTTCGGTTGCTCTGAGAAGTTCTAGTTCCAAGCGAATTTTCCCAATCTCTTCTCAATTTTATAGCTCTTTCATATCCCCTTCCTTGGTCTCCGAATTGGCTTATGGAAATGACACAACTTATGCTTCCAATCCATGGTGGAGATCCATGGCCACTTTTACACGAACAAAACCCCATGTGAATGTGGGAACTATTGGACATGTTGATCATGGGAAGACCACACTTACTGCAGCAATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCTAAGGCTGTAGCTTTTGATGAAATTGATAAGGCTcctgaagagaagaagagaggaatcaCAATTGCTACGGCCCATGTTGAGTATGAGACGTCTAAACGACACTATGCGCATGTAGATTGCCCTGGACATGCTGATTATGTCAAAAATATGATTACGGGAGCTGCCCAAATGGATGGAGGCATTCTTGTTGTATCTGGCCCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCACGCCAGGTTGGTGTACCATCTCTTGTTTGctttttgaataaaattgatGTTGTTGATGATCCAGAGTTGTTAGAGTTGGTTGAAATGGAACTCCGAGAACTACTAAGCTTCTACAAGTTCCCTGGGGACGAAATCCCTATTGTTAGAGGCTCAGCATTGTCTGCTTTACAGAATACAAATGATGAAATTGGAAGAAAAGCTATTCTAAAGTTGATGGATGCAGTAGATGAATACATTCCAGATCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCAATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTAGCCACTGGCCGTGTCGAACAAGGGACTATTAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGTGTTGAGATGTTCAAGAAGATATTGGACAGGGGACAAGCTGGTGATAATGTTGGTCTTCTTCTACGTGGTCTAAAACGGGAAGATATTCAACGTGGTCAGGTGATTGCAAAGCCTGGTTCCTTGAAAACATACAAGAAGTTTGAGGCAGAGATATATGTACTCACGAAGGATGAAGGTGGGCGACACACTGCCTTCTTCTCAAACTATATGCCTCAGTTTTACATGAGGACTGCTGATATCACTGGAAAAGTTGAATTGCCTGAAGATGTTAAAATGGTTATGCCCGGGGACAACGTTACTGCAGTATTTGAACTGCTTTCACCTGTTCCACTTGAAGCTGGTTAG 1275 0.422 MASVALRSSSSKRIFPISSQFYSSFISPSLVSELAYGNDTTYASNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMPQTKEHILLARQVGVPSLVCFLNKIDVVDDPELLELVEMELRELLSFYKFPGDEIPIVRGSALSALQNTNDEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDRGQAGDNVGLLLRGLKREDIQRGQVIAKPGSLKTYKKFEAEIYVLTKDEGGRHTAFFSNYMPQFYMRTADITGKVELPEDVKMVMPGDNVTAVFELLSPVPLEAG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0566 424 Pfam Elongation factor Tu GTP binding domain 58 251 IPR000795 GO:0003924|GO:0005525
Sto8g0566 424 TIGRFAM EF-Tu: translation elongation factor Tu 50 424 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sto8g0566 424 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 424 IPR009001 -
Sto8g0566 424 PANTHER ELONGATION FACTOR TU 14 424 - -
Sto8g0566 424 Gene3D - 50 253 IPR027417 -
Sto8g0566 424 PRINTS GTP-binding elongation factor signature 62 75 IPR000795 GO:0003924|GO:0005525
Sto8g0566 424 PRINTS GTP-binding elongation factor signature 106 114 IPR000795 GO:0003924|GO:0005525
Sto8g0566 424 PRINTS GTP-binding elongation factor signature 126 136 IPR000795 GO:0003924|GO:0005525
Sto8g0566 424 PRINTS GTP-binding elongation factor signature 142 153 IPR000795 GO:0003924|GO:0005525
Sto8g0566 424 PRINTS GTP-binding elongation factor signature 179 188 IPR000795 GO:0003924|GO:0005525
Sto8g0566 424 Pfam Elongation factor Tu domain 2 275 345 IPR004161 GO:0005525
Sto8g0566 424 Hamap Elongation factor Tu [tuf]. 49 424 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sto8g0566 424 CDD EF_Tu 59 253 IPR041709 -
Sto8g0566 424 Pfam Elongation factor Tu C-terminal domain 351 423 IPR004160 -
Sto8g0566 424 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 99 114 IPR031157 -
Sto8g0566 424 TIGRFAM small_GTP: small GTP-binding protein domain 61 197 IPR005225 GO:0005525
Sto8g0566 424 SUPERFAMILY Translation proteins 255 351 IPR009000 -
Sto8g0566 424 CDD EFTU_II 261 349 IPR033720 -
Sto8g0566 424 PANTHER ELONGATION FACTOR TU-RELATED 14 424 - -
Sto8g0566 424 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 58 254 IPR000795 GO:0003924|GO:0005525
Sto8g0566 424 Gene3D Translation factors 390 424 - -
Sto8g0566 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 276 IPR027417 -
Sto8g0566 424 Gene3D Translation factors 256 386 - -
Sto8g0566 424 CDD EFTU_III 352 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0566 Sto-Chr8 3468970 3472671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0566 56 365 Eukaryotic Initiation Factors Gene Family AT5G60390 33.528 1.38e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0566 K02358 - zju:107425993 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0566 8 3468970 3472671 Sto8g0566 8 3468970 3472671 ECH