Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0533 ATGGCGGAAGGGAAGGAAGAGAGAAAATCTAGCGAGGAGAGTGTGAAATTGTTTGTGGGTCAAGTGCCGAAGCATATGACGGAAGCTGAACTCCTCGCAATGTTCAAGGAGTTCGCTTTGGTGGATGAGGTCAACATCATCAAGGATAAAATCACCCGCTCCTCCCGAGGCTGTTGCTTTGTAATTTGTCCGTCCAGGGAGGAGGCAGACAAGGCGGTCAATTCGTGTCATAATAAGAAAACGCTACCTGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGACGGCGAGTTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAACGTTTCTGAAGCTGAAGTGTCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAGATTTTACGCGGTTCTCAGCAAACAAGTAAAGGCTGTGCCTTTTTGAAGTACGAAACCAAAGAACAGGCGCTTGCTGCCCTGGAGGCAATCAATGGAAAACATAAGATGGAGCATTTTGGACCTTCAAGCGGCATTCAGCCACAAAATCCTATTGGTGAGGGACGTGAACATTTAATCATGTGTCTCAAATGTAATGGTTCAAGTGTTCCTTTGGTGGTCAAATGGGCAGACACTGAAAAGGAAAGACAAGCTCGGAGGGCTCAGAAAGCACAGTCCCAAGCTTCTAATATGCCACATACTGACTCTCAGCACCCTTCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCCCAATATAATGGATATGGTTATCAGGCTCCTGGTGGCTATGGGCTCATGCCATACCGCCTGCCACCATTGCAGAATCAACCCGGTTATCATAATATGATGCCTCACATGAGTCAAGGAAATGCATTGGGGCCTGACATTGGCCCCAATATGAACCCTAGAAATTATCCTGTGCCTCCTGCAAGTTACTATGGCTCTTATCCTGCAGTTCCAGGTTTACAGCATCCAATGGCTTATCCTGGAGGAGTCATAAGTCCAAGGCCTTTGAGTAGTTCTCCTGGTTCAGTTTCTCCTGCAGGAGGGACTAGCAACTCTGCTGCATCTTCTGGCCCCAACAAAAATTCCAGTTCTCAAGTCGAAGGACCACCTGGTGCCAATCTGTTTATTTATCACATACCTCCAGAATATGGAGATCAAGAGCTTGCAACTGCTTTTCAACCATTCGGTAGAGTTTTGAGTGCTAAAGTATTTGTGGATAAAGCAACTGGTGTAAGCAAATGTTTCGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAAGTTGCCATTAGTATGATGAATGGATGCCAATTAAGTGGTAAGAAATTGAAGGTTCAGCTTAAGAGGGACAACAAGCAGAGTAAGCCTTACTGA 1380 0.4529 MAEGKEERKSSEESVKLFVGQVPKHMTEAELLAMFKEFALVDEVNIIKDKITRSSRGCCFVICPSREEADKAVNSCHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEHFGPSSGIQPQNPIGEGREHLIMCLKCNGSSVPLVVKWADTEKERQARRAQKAQSQASNMPHTDSQHPSLFGALPMGYVPQYNGYGYQAPGGYGLMPYRLPPLQNQPGYHNMMPHMSQGNALGPDIGPNMNPRNYPVPPASYYGSYPAVPGLQHPMAYPGGVISPRPLSSSPGSVSPAGGTSNSAASSGPNKNSSSQVEGPPGANLFIYHIPPEYGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQVAISMMNGCQLSGKKLKVQLKRDNKQSKPY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0533 459 MobiDBLite consensus disorder prediction 213 239 - -
Sto8g0533 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Sto8g0533 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Sto8g0533 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 446 IPR000504 GO:0003723
Sto8g0533 459 Gene3D - 2 99 IPR012677 -
Sto8g0533 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 452 IPR000504 GO:0003723
Sto8g0533 459 PANTHER RNA BINDING PROTEIN 7 167 - -
Sto8g0533 459 PANTHER RNA BINDING PROTEIN 189 446 - -
Sto8g0533 459 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 167 - -
Sto8g0533 459 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 189 446 - -
Sto8g0533 459 SMART rrm1_1 104 179 IPR000504 GO:0003723
Sto8g0533 459 SMART rrm1_1 16 92 IPR000504 GO:0003723
Sto8g0533 459 SMART rrm1_1 375 448 IPR000504 GO:0003723
Sto8g0533 459 CDD RRM1_2_CELF1-6_like 16 92 - -
Sto8g0533 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 166 IPR000504 GO:0003723
Sto8g0533 459 MobiDBLite consensus disorder prediction 221 236 - -
Sto8g0533 459 Gene3D - 344 451 IPR012677 -
Sto8g0533 459 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Sto8g0533 459 SUPERFAMILY RNA-binding domain, RBD 103 454 IPR035979 GO:0003676
Sto8g0533 459 MobiDBLite consensus disorder prediction 337 369 - -
Sto8g0533 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Sto8g0533 459 MobiDBLite consensus disorder prediction 333 369 - -
Sto8g0533 459 CDD RRM1_2_CELF1-6_like 104 179 - -
Sto8g0533 459 Gene3D - 100 220 IPR012677 -
Sto8g0533 459 CDD RRM3_CELF1-6 376 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0533 Sto-Chr8 3291646 3296271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0533 375 456 Eukaryotic Initiation Factors Gene Family AT4G34110 38.095 2.02e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0533 K13207 - gmx:100813239 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0533 8 3291646 3296271 Sto13g3577 13 38276720 38280466 CCT
Sto8g0533 8 3291646 3296271 Sto8g0533 8 3291646 3296271 ECH