Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0522 ATGGAGGACTCTGCATCCCAACCAAGAGAGCACTTTGGAAAGATGCAATTTGGCTCACTTAGCAAACCCAAAGATCGTCATGAACTAGTCAGACGTGATGTTAAGCAAGTTATTTGTTCAGTCTGTGATGCTGAGCAAGAGGTTGCCAAGGTGTGTTCTAATTGTGGCGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACAAACAAAGGGCAATTCCATTGTGATGAATGTGGTATTTGTAGGGTTGGTGGTCGTGAAAAGTTCTTTCATTGTGCAAAATGTGGATCTTGCTATTCAATTAGCTTGCAAAACAATCACCAATGTGTAGAGAACTCAATGAAGAATCACTGCCCTGTCTGCTATGAGTATCTATTTGATTCAACTAAACTCACCACGATAATGAGTTGTGGGCACACAATGCATATGGAGTGCTGTCAAGATATGGCAACCCATGATCAGTATCGTTGCCCTATATGCTCGAAATCAATCTTTGATATGTCTGAGCATTGGCGAGATTTAGATTGGGAGATTGAAGCAGTTCCCATGCCTGAGAAGTATAATATTGAGGTCTCAATTCTTTGTAATGATTGCAACACCACCAGCGCAGTTTCCTTTCACATTTTAGCTGTGGCCTTCTATTGTATTACCATGGCAAAAGAAATTACAGATTTTCCTGATTGTTCGGCAAGTCTTGAGTTTATGGGTGACATAGTGGATGATTGCCgttcttaa 753 0.4011 MEDSASQPREHFGKMQFGSLSKPKDRHELVRRDVKQVICSVCDAEQEVAKVCSNCGVNMGEYYCEICKFYDDDTNKGQFHCDECGICRVGGREKFFHCAKCGSCYSISLQNNHQCVENSMKNHCPVCYEYLFDSTKLTTIMSCGHTMHMECCQDMATHDQYRCPICSKSIFDMSEHWRDLDWEIEAVPMPEKYNIEVSILCNDCNTTSAVSFHILAVAFYCITMAKEITDFPDCSASLEFMGDIVDDCRS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0522 250 Pfam Zinc-ribbon 171 217 IPR039512 -
Sto8g0522 250 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 19 217 IPR031109 GO:0008270|GO:0016567
Sto8g0522 250 Pfam Ring finger domain 123 166 IPR001841 -
Sto8g0522 250 Gene3D - 194 219 - -
Sto8g0522 250 ProSiteProfiles Zinc finger RING-type profile. 124 167 IPR001841 -
Sto8g0522 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 182 IPR013083 -
Sto8g0522 250 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 217 - -
Sto8g0522 250 SMART ring_2 124 166 IPR001841 -
Sto8g0522 250 SUPERFAMILY CHY zinc finger-like 26 58 IPR037274 GO:0008270
Sto8g0522 250 Pfam CHY zinc finger 24 69 IPR008913 GO:0008270
Sto8g0522 250 ProSiteProfiles Zinc finger CTCHY-type profile. 59 123 IPR017921 -
Sto8g0522 250 SUPERFAMILY Zinc hairpin stack 60 117 IPR037275 -
Sto8g0522 250 ProSiteProfiles Zinc finger CHY-type profile. 1 57 IPR008913 GO:0008270
Sto8g0522 250 SUPERFAMILY RING/U-box 123 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0522 Sto-Chr8 3210291 3213896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0522 27 237 C2H2 Transcription Factor Family AT3G18290 37.838 4.68e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0522 K10144 - vvi:100264899 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0522 8 3210291 3213896 Sto8g0522 8 3210291 3213896 ECH