Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0515 ATGGAGTTGTACGGTCGGAACCCGGGATGGGATGGGTCGCAATCCGGTAATCAATCTGAATGGCGCCCATCAGGCGGCGAAACTGGGCTTGAAGAATCGATGTGGCAATTAACACTCGGTAGTAGCGAGTCATACCCGGAGCGACCAGGCGTACCCAATTGTGTGTATTACATGCGAACAGGATTCTGTGGATATGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCAGCAGCCGTAAGAGCTACAGGGGAGTACCCAGAACGAGTAGGGGAACCTCCATGTCAGTACTATTTAAAAACTGGAGCCTGCAAATTTGGTGCTTCCTGTAAATTCCACCATCCAAAACATGGAGGTGGATCTTTAAGTCAAGCTCCATTAAATATTTATGGATACCCAATACGGCCGGGCGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCAGCTGGCACATCAATGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACTGTCCCTCTGGCTGAGCAGTATGGGGGGGCATCCACCAGCTTGAGAGTGGCTAGGCCTTCACTATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTCCTCCTTTCCCCTGGGGTTGTTCCCTTTCCAGGATGGAGTCCTTATACGGCTCAGGCACCTGTAAGTCCTGTGTTATCTCCTGGTGCTCAATCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCAACGTCAGCTTTTGCTAGACCATATACTCCTCTGCCCTCTACTAATGGCTTTTCAGGCAGTAGCCAGAAGGAACAAATATTTCCTGAAAGACCCGGTGAACCTGAATGCCAATACTATCTGAGGACAGGGGACTGTAAATATGGACTAGCTTGTCGATATCATCATCCTAGGGACCGGGCTGTGACACGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGGGTAGAACCTTGTGTTTTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACCTGCAAATTTGACCATCCTTTGGGGTCTATGAGATACAGTCCTTCAGCATCTTCTCTCATTGATATGCCAGTTACTCCATACCCTGTTGGATCTTTGCTGTCTACCTTGGCTCCTTCAACAACATCTTCAGAGCTTAGGCCTGAATTGATGTCAGgctccaaaatggaatctttCTCTACCAGAATGCCTTCCTCCGGAAATGGCTCAAGCAGTtctgttaatttaattttctcacAAGGTGGGTCCGTCTCTCTTTCTGATGTGCAATTATCTAGTCAGAGTTCTACCCCTTTAAGCAGTAGCAGAAGCACCAGACAAAGTGGTGACATACGTTGA 1422 0.4726 MELYGRNPGWDGSQSGNQSEWRPSGGETGLEESMWQLTLGSSESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGACKFGASCKFHHPKHGGGSLSQAPLNIYGYPIRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLAEQYGGASTSLRVARPSLLPGSYVQGAYGPVLLSPGVVPFPGWSPYTAQAPVSPVLSPGAQSAVGATSLYGVTQLSSSTSAFARPYTPLPSTNGFSGSSQKEQIFPERPGEPECQYYLRTGDCKYGLACRYHHPRDRAVTRPLLSPIGLPLRPGVEPCVFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDMPVTPYPVGSLLSTLAPSTTSSELRPELMSGSKMESFSTRMPSSGNGSSSSVNLIFSQGGSVSLSDVQLSSQSSTPLSSSRSTRQSGDIR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0515 473 Gene3D - 127 174 - -
Sto8g0515 473 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Sto8g0515 473 PANTHER PROTEIN PHOSPHATASE RELATED 17 456 - -
Sto8g0515 473 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 17 456 - -
Sto8g0515 473 MobiDBLite consensus disorder prediction 399 435 - -
Sto8g0515 473 SUPERFAMILY CCCH zinc finger 344 373 IPR036855 GO:0046872
Sto8g0515 473 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Sto8g0515 473 SUPERFAMILY CCCH zinc finger 302 326 IPR036855 GO:0046872
Sto8g0515 473 MobiDBLite consensus disorder prediction 1 28 - -
Sto8g0515 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Sto8g0515 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 325 IPR000571 GO:0046872
Sto8g0515 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 368 IPR000571 GO:0046872
Sto8g0515 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Sto8g0515 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Sto8g0515 473 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Sto8g0515 473 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Sto8g0515 473 Gene3D - 48 126 - -
Sto8g0515 473 Gene3D - 297 379 - -
Sto8g0515 473 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Sto8g0515 473 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Sto8g0515 473 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Sto8g0515 473 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Sto8g0515 473 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Sto8g0515 473 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Sto8g0515 473 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Sto8g0515 473 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Sto8g0515 473 MobiDBLite consensus disorder prediction 450 473 - -
Sto8g0515 473 MobiDBLite consensus disorder prediction 10 24 - -
Sto8g0515 473 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0515 Sto-Chr8 3170866 3175226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0515 1 422 C2H2 Transcription Factor Family AT5G18550 52.941 9.75e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto8g0515 zf-CCCH 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0515 - - lja:Lj5g3v1665190.1 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0515 8 3170866 3175226 Sto8g0515 8 3170866 3175226 ECH