Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0512 ATGTCAAACAAGAATATTTCAGGTGATGAAGGAAGTATGTCGTCAGGGGAAATAGAAGTGCATCAAGAGAAGCAAAATGAGGACTTGCATAATTCACCTCCAATCCcacctaagaagaagagaaaccTCCCCGGAACTCCAGATCCAAATGCTGAGATTATAGCATTATCACCAACAACATTAATGGCGACAAACAGATTCGTGTGTGAGATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTACAGTTGCACAGAAGAGGTCACAATCTGCCATGGAAGCTGAGACAAAGGGCAAGCACAGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCATCATGCGTGCACCACAACCCAGGTCGTGCATTAGGAGACCTCACTGGCATCAAGAAGCATTATAGCAGGAAGCATGGAGAGAAGAAATGGAAGTGCGATAAGTGCTCCAAAAGATACGCTGTCCAATCTGATTGGAAGGCCCACCACAAGACCTGTGGCACCAGGGAATACAAATGTGATTGTGGAACCATTTTCTCAAGGAGAGATAGTTTCATCACCCACAGAGCTTTTTGTGACGCATTAACCGAAGAAAACAGCCGACTCAACATGCATAATCAAATGCCACATCTCATCTCCACACCCACAATGCCTCTAACTTCCTCCGACTTCCCTATCAGCAACCCACTCAAACCCCTCTCCCAAGACCCATTCAAGCCTGCCTCCCTCTTCGCCGGCCCAAACCCCATCTCTCCCTCCTCTGCCCTCCACCTCAGCTCCTCTGGGGGGTTCACTTACTTCCATGATGCCAAAAATGGAGCCCCAATTATCTCCGGCTCGCCCCACATGTCAGCCACGGCCTTATTGCAGAAAGCAGCCCAGATGGGTGCTACTGCAAGTAATACCGTCAACTCTCCCATGCCCATGATGCACAAGAGCTTCGTTACTTGTATGCCTGGTCATGACCATGTGTCTTCTTCCATGAACAAACCACCATTTAACGCCTCCTATGATCACTTCCTTCCACATCATGATCAGTTGTTCCAGAAAAGCCCACCTGAAATGTCACATTTATTTGAtactattaataataatactactGCCATGAATGATCATATGAGCTTGTTCAGCCAAATGTTCATGGGGAATGACCAGATTCAGAACCCaggattgatgatgaagaataaTGTGGAACAAGAGAGCAGTACTACTAGTTCCAGTTTGGTGCATGGGAGAGACGTAGTAGCAGAAGGCAACCCAATGGCTAGGGTTCATGATTTCTTAGGGGTTGGGGGTTCAGCTTCAAGGGTAGGGCATCAGAATCAGAGAACGGAGTTAGAAGCAATGAGCCATCAGAGGCTACCAGTTATGGATCACTTTCAACACCTTCCCAATGGGGATTCACCTTTGGATAAAACCATTTGGGATGTTTGA 1431 0.4556 MSNKNISGDEGSMSSGEIEVHQEKQNEDLHNSPPIPPKKKRNLPGTPDPNAEIIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASTEVKKRVYVCPEPSCVHHNPGRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHHKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENSRLNMHNQMPHLISTPTMPLTSSDFPISNPLKPLSQDPFKPASLFAGPNPISPSSALHLSSSGGFTYFHDAKNGAPIISGSPHMSATALLQKAAQMGATASNTVNSPMPMMHKSFVTCMPGHDHVSSSMNKPPFNASYDHFLPHHDQLFQKSPPEMSHLFDTINNNTTAMNDHMSLFSQMFMGNDQIQNPGLMMKNNVEQESSTTSSSLVHGRDVVAEGNPMARVHDFLGVGGSASRVGHQNQRTELEAMSHQRLPVMDHFQHLPNGDSPLDKTIWDV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0512 476 SMART c2h2final6 67 89 IPR013087 -
Sto8g0512 476 SMART c2h2final6 108 138 IPR013087 -
Sto8g0512 476 SMART c2h2final6 143 163 IPR013087 -
Sto8g0512 476 MobiDBLite consensus disorder prediction 1 51 - -
Sto8g0512 476 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Sto8g0512 476 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Sto8g0512 476 Gene3D Classic Zinc Finger 106 192 - -
Sto8g0512 476 Gene3D Classic Zinc Finger 67 105 - -
Sto8g0512 476 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 451 - -
Sto8g0512 476 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 5 451 - -
Sto8g0512 476 Pfam Zinc finger, C2H2 type 67 89 IPR013087 -
Sto8g0512 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0512 Sto-Chr8 3133973 3135558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0512 9 299 IDZ Gene Family AT3G50700 54.286 9.64e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g0512 zf-C2H2 0.0047 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0512 - - zju:107426293 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0512 8 3133973 3135558 Sto8g0512 8 3133973 3135558 ECH