Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0469 ATGGATATGAACGCAGATTCCCACACTAAGTTCGCGGATAACGGCAAGGTCATGCTTGCCTCTGCAATTCTTCTATTCCTAATACTTGTCATCGTTATTTTCTTTCGCACCTACGCCTACTCCTGCTTCCGTCGCCATCGCCATCACCCTCCCAATCGGAACCTCCTTCCCACTCTTGCCGCCTCCAATAATAGCAAGGGCCTTCACCCTTCCCTTTTCAACTTACTTCCTACCTTCAATTACTCCTCCCACTCCCACCGCCCTCTGCACGAGTGTGCCGTCTGCTTATCGGAGTTCCAAGAAGACGAAGAAGGCCGCCTCCTCCCTAACTGCAACCACGGTTTCCACACCCATTGCATCGACAAGTGGTTCCGATCTCACTCCAATTGCCCCTTATGCCGAGCTCCGGTGGCGCCCCCCAAGATAACAGAGGCGGCAGCGGGGTGCTCCTATCTTCCGCCGCCGATTGGGTGCCCCAGCAAGGCCTTAGATGTAGAGGAGGGAGTAAAAGGGAAAGAACTAATAAAGAAGGTGTGCGAGAAATCGCCATCGAGGGAAGTGTGCACGAGAGTGCTGGAAGCAGACCCAAGGTCGGAAAATGCTGGGTTAGATGAGTTGGCGATGATATCCCTGAAGGAAGCAAGGGCAAATGCGTCAGACATAATAAATCACTTGAAGCTGTTGGTGGTAAATGACAGTTTAGGGCCTGATGTCCAACAAGGGATGTCTGATTGCTTGGAGACATTGGGAGACTCAGAGGAGCAGCTTGAGGATGCAATAGCAGCACTTTTGGTCAAAGCCTTGGATGACACGCAGAGATGGCTTCAAGTAGCCTTGGCCGCAGTGGATACCTGTCGGAGTTACCTTCATGGAAACGATCGTCTTCTCATGAATAAGGAGCAAAACTTTCGCCTCATGTGCGACATCTCCCTCTCCATCTGCAACACCTTGGTCTCTGGAATCTAG 966 0.5166 MDMNADSHTKFADNGKVMLASAILLFLILVIVIFFRTYAYSCFRRHRHHPPNRNLLPTLAASNNSKGLHPSLFNLLPTFNYSSHSHRPLHECAVCLSEFQEDEEGRLLPNCNHGFHTHCIDKWFRSHSNCPLCRAPVAPPKITEAAAGCSYLPPPIGCPSKALDVEEGVKGKELIKKVCEKSPSREVCTRVLEADPRSENAGLDELAMISLKEARANASDIINHLKLLVVNDSLGPDVQQGMSDCLETLGDSEEQLEDAIAALLVKALDDTQRWLQVALAAVDTCRSYLHGNDRLLMNKEQNFRLMCDISLSICNTLVSGI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0469 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 151 - -
Sto8g0469 321 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Sto8g0469 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 140 IPR013083 -
Sto8g0469 321 Pfam Ring finger domain 91 134 IPR001841 -
Sto8g0469 321 CDD RING-H2_EL5_like 91 134 - -
Sto8g0469 321 Gene3D Invertase/pectin methylesterase inhibitor family protein 170 318 IPR035513 -
Sto8g0469 321 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 172 317 IPR035513 -
Sto8g0469 321 SMART ring_2 92 133 IPR001841 -
Sto8g0469 321 PANTHER RING-H2 FINGER PROTEIN ATL64 6 151 - -
Sto8g0469 321 Pfam Plant invertase/pectin methylesterase inhibitor 174 313 IPR006501 GO:0004857
Sto8g0469 321 SMART PMEI_2 170 313 IPR006501 GO:0004857
Sto8g0469 321 SUPERFAMILY RING/U-box 81 140 - -
Sto8g0469 321 TIGRFAM PME_inhib: pectinesterase inhibitor domain 170 317 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0469 Sto-Chr8 2904525 2908494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0469 2 137 Rapid Response to Elicitors AT3G16720 41.333 2.81e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0469 - - gmx:102669188 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0469 8 2904525 2908494 Sto8g0469 8 2904525 2908494 ECH