Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0466 ATGGATTACCTCAGAACAAGAAAATCCCTTTTGCTGTCTCTGGTTTCTATTTTCAGTCTAGTCTTTATGTTGCCCTTTCGTCTTCCCCATTTCACCCACACCCCCaaaacaaaacacacacacacacacctccATTTTGAAAAACACCAAGTACCTCACTCTGCATGCGAAGGAACACTGTACCCACAACTGTGCGTCTCCACCCTCACTTCCCTCCCAGATATCACCACCAAATCTGTCACTCAAATCATCTCCTCCCTCCTCAACCACACCCTGTACGAGCTTCAATCCTCCTCCACCAACTGCTCTGCACTCCGAACCGACCTCCACCTCACCAATCTCGAAAACAGAGCCCTCGATGACTGCCTCAAACTCTTCGACGACACCCTGGACGACCTCCACACCACCATTGCTGCTCTCTCCAAGCCCACCACTTACCATGACTTGCAGACTCTGCTTAGCGCCGCAATGACCAATTTGTACACGTGTCTTGATGGGTTTGCTTACACAGAGGGGAATGTGAGACACCAAATACAGGACAGCCTGCTTCAGATCTCACGCCTTCTTAGTAACTCCTTGGCCATGCTCAACAAACTCTCCAACTCTAATGAGGCTGACCACGGAAACACCAAAAATGGGTTTCCTTCGTGGGTGTCATCCAAAGAACGGAAGCTTCTTGAAGCTCATGTGAATGAGACGAGGTTTGATTTTGTGGTGGCCAAAGATGGCACAGGCAATTTCACCACCATTGGGGAAGCACTGGCTGCAGCTCCAAATTCCAGCACAACCAGGCACGGCAAGATAGTGATACACATAAAAGCAGGGGCGTACATGGAGAATGTGGAGGTaatgaggaagaagaggaattTGATGTTGGTTGGAGATGGGATTGGAAACACCATTGTCAAAGCAGGTCGGAATGTTATAGACGGATGGACTACGTTCCAATCGGCCACTGTAGCTGTGGTAGGAGGAGGATTCATAGCAAAGGGCATAACCTTCGAGAACTCAGCAGGACCCAGCAAGCACCAAGCCGTAGCCCTTAGAAATAGTGCGGACCTATCAGCATTCTACAAATGCAGCTTCGTGGGGTACCAAGACACCCTCTACGTGCATTCCCTGCGTCAATTCTATCGCCAATGCGACATTTACGGTACCGTAGACTTCATATTCGGGAACGCAGCCGCCGTCTTCCAAAACTGCAACTTGTACGCACGCAAGCCTAACCAGAATCAGAAGAACGTGTTCAGTGCTCAAGGCAGAGAGGATCCTAACCAGAACACTGGCATTTCTTTCTTCAACTGCAAAATCGCTGCTGCTTCGGATTTAGTCCCTTTTAAGTCCTCTTTCCGCACCTACTTGGGACGCCCTTGGAAGCCCTATTCCAGGACGGTTTATATGAAATCGTACATGGAGGATGTGGTTGAGGCGGCAGGGTGGTTGGAATGGAATGGAACATTGGGATTGGATACTTTGTATTATGGGGAGTATATGAATACGGGTCCCGGTTCCAATACGAGTGGTAGAGTTAGATGGCCTGGTTATAGGCTCATCAACTCCACGGAGGCTACTCACTTTACGGCTGCCCAGTTTATTCAAGGCAATGACTGGTTGAATTCCACTGCTATTCCATTTTTCCTTAACTTGACTGCATAA 1656 0.4758 MDYLRTRKSLLLSLVSIFSLVFMLPFRLPHFTHTPKTKHTHTHLHFEKHQVPHSACEGTLYPQLCVSTLTSLPDITTKSVTQIISSLLNHTLYELQSSSTNCSALRTDLHLTNLENRALDDCLKLFDDTLDDLHTTIAALSKPTTYHDLQTLLSAAMTNLYTCLDGFAYTEGNVRHQIQDSLLQISRLLSNSLAMLNKLSNSNEADHGNTKNGFPSWVSSKERKLLEAHVNETRFDFVVAKDGTGNFTTIGEALAAAPNSSTTRHGKIVIHIKAGAYMENVEVMRKKRNLMLVGDGIGNTIVKAGRNVIDGWTTFQSATVAVVGGGFIAKGITFENSAGPSKHQAVALRNSADLSAFYKCSFVGYQDTLYVHSLRQFYRQCDIYGTVDFIFGNAAAVFQNCNLYARKPNQNQKNVFSAQGREDPNQNTGISFFNCKIAAASDLVPFKSSFRTYLGRPWKPYSRTVYMKSYMEDVVEAAGWLEWNGTLGLDTLYYGEYMNTGPGSNTSGRVRWPGYRLINSTEATHFTAAQFIQGNDWLNSTAIPFFLNLTA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0466 551 CDD PMEI-like_3 54 201 - -
Sto8g0466 551 SUPERFAMILY Pectin lyase-like 235 547 IPR011050 -
Sto8g0466 551 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Sto8g0466 551 Gene3D - 231 549 IPR012334 -
Sto8g0466 551 Pfam Plant invertase/pectin methylesterase inhibitor 53 195 IPR006501 GO:0004857
Sto8g0466 551 SMART PMEI_2 47 195 IPR006501 GO:0004857
Sto8g0466 551 Pfam Pectinesterase 236 535 IPR000070 GO:0030599|GO:0042545
Sto8g0466 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 201 IPR035513 -
Sto8g0466 551 PANTHER PECTINESTERASE 24 549 - -
Sto8g0466 551 PANTHER PECTINESTERASE 24 549 - -
Sto8g0466 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 200 IPR035513 -
Sto8g0466 551 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0466 Sto-Chr8 2873500 2877672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0466 76 549 Carbohydrate Esterase AT4G02320 53.347 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0466 K01051 - gmx:100802881 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0466 8 2873500 2877672 Sto13g3650 13 38702422 38706630 CCT
Sto8g0466 8 2873500 2877672 Sto8g0466 8 2873500 2877672 ECH