Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0460 ATGGTTTCGCTGAAACTCCAGAAGCGGCTTGCCGCTAGCGTCCTCAAGTGCGGTAGAGGCAAAGTTTGGCTTGACCCAAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATTAGGAAGTTGGTTAAAGATGGTTTCATCATCCGTAAGCCAACTAAGATTCACTCTCGTTCACGTGCTCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGAGAAAGGGTACAAGAGAGGCAAGGCTTCCAACCAAAATTCTTTGGATGAGGAGGATGCGTGTGCTGAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCATGATATGTACATGAAAGTTAAGGGTAATGTTTTCAAGAACAAAAGAGTCCTTATGGAGAGCATTCACAAGTCTAAGGCTGAGAAGGCAAGAGAAAAGACTTTGTCTGACCAGTTTGAAGCTAAGCGTGCTAAGAACAAGGCAAGCCGAGAGAGAAAGATTGCTAGGAGGGAGGAGCGCTTGGCCCATGGTCCCGGAGAAAAGCCAGTGGCAGCACCTCCTGCACCTGCTACAGCGTCACAGACAGCCCAAGTATCAAAGAAATCAAAGAAGTGA 636 0.4717 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAHGPGEKPVAAPPAPATASQTAQVSKKSKK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0460 211 MobiDBLite consensus disorder prediction 149 185 - -
Sto8g0460 211 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Sto8g0460 211 PANTHER RIBOSOMAL PROTEIN L19 1 211 - -
Sto8g0460 211 Gene3D - 57 186 - -
Sto8g0460 211 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sto8g0460 211 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sto8g0460 211 PANTHER 60S RIBOSOMAL PROTEIN L19 1 211 IPR039547 GO:0003723|GO:0003735|GO:0022625
Sto8g0460 211 MobiDBLite consensus disorder prediction 57 79 - -
Sto8g0460 211 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Sto8g0460 211 MobiDBLite consensus disorder prediction 149 211 - -
Sto8g0460 211 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Sto8g0460 211 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sto8g0460 211 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Sto8g0460 211 MobiDBLite consensus disorder prediction 57 85 - -
Sto8g0460 211 MobiDBLite consensus disorder prediction 197 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0460 Sto-Chr8 2831700 2833318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0460 1 211 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.886 6.16e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0460 K02885 - gmx:100499875 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0460 8 2831700 2833318 Sto8g0460 8 2831700 2833318 ECH