Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0437 ATGGGAAGGGCACCTTGCTGTGAAAAAGTGGGACTGAAGAAGGGAAGGTGGACAGCCGAGGAGGATCAGATTCTCATTAACTACATTCATGCCAATGGAGAAGGCTCTTGGAGGTCACTCCCCAAAAATGCAGGATTACTAAGATGTGGAAAGAGTTGCAGACTAAGGTGGATTAACTATTTGAGAGCTGATCTTAAAAGAGGCAACATTTCCGCTCAGGAAGAACAAATTATTATCAACTTGCATGCTTCCTTAGGCAACAGGTGGTCTTTGATAGCTAGTGAGTTGCCAGGAAGAACAGACAACGAGATAAAGAATTATTGGAATTCTCATCTGAGCAGAAAAACGCGGAGCTTGAGAAGGGGAGTTATGATGGATATTGTGAAAGTGAAACCCACCATTTTGGCGAAACAAAGTGAGCAACAGAAACATATGGAGGAAGCAGTTGCCTTGCCCAGCACCCCCGCACTAGAGAACGAAAGCCTACCTAGACAGCATCTACTCACTACCTCCTCTCACTCTCAACAACACAAAGAGCAGCAGGAACACAAGGCTACTTCACCTTATGACTATGACCATTCTATTTTCTCCCCAACTCAACTTTTCGGAATTGACGACGCAGTTTTATGTTTTAACCACGACCTCCTCCAACAACATTGTGTCACGTCTCCTAATACCCAACACTACACATCCAATTATGACCACTCCTATTCTCCCTCTTCGCTGCCTTCTCCTAACTTTGATCACAACTGGGATTGGGACACACTCCTAATTcgttccaattccaattcccaCTCATCATTCCACCCAAAACACAACCTCCTCTCCAAACCCTAA 837 0.4361 MGRAPCCEKVGLKKGRWTAEEDQILINYIHANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAQEEQIIINLHASLGNRWSLIASELPGRTDNEIKNYWNSHLSRKTRSLRRGVMMDIVKVKPTILAKQSEQQKHMEEAVALPSTPALENESLPRQHLLTTSSHSQQHKEQQEHKATSPYDYDHSIFSPTQLFGIDDAVLCFNHDLLQQHCVTSPNTQHYTSNYDHSYSPSSLPSPNFDHNWDWDTLLIRSNSNSHSSFHPKHNLLSKP 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0437 278 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto8g0437 278 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto8g0437 278 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 206 - -
Sto8g0437 278 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto8g0437 278 CDD SANT 16 61 IPR001005 -
Sto8g0437 278 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto8g0437 278 SMART sant 66 114 IPR001005 -
Sto8g0437 278 SMART sant 13 63 IPR001005 -
Sto8g0437 278 PANTHER MYB TRANSCRIPTION FACTOR 2 206 - -
Sto8g0437 278 CDD SANT 71 112 IPR001005 -
Sto8g0437 278 Gene3D - 11 67 - -
Sto8g0437 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto8g0437 278 Gene3D - 71 115 - -
Sto8g0437 278 MobiDBLite consensus disorder prediction 169 190 - -
Sto8g0437 278 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto8g0437 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0437 Sto-Chr8 2719350 2720850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0437 1 155 MYB Transcription Factor Family AT2G47460 67.742 2.50e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto8g0437 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0437 K09422 - jre:108991418 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0437 8 2719350 2720850 Sto13g3677 13 38849695 38852064 CCT
Sto8g0437 8 2719350 2720850 Sto8g0437 8 2719350 2720850 ECH