Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0426 ATGGAAGAGGTAGTACTGTTGGTCGATGATTTGAAATCACTTTCCGGAATTCCTCGCTGCAGAATTTGTCACGAAGAAGAATTTGAGAGCTCGGAAAGCTTTGAAGCTCCTTGTGCTTGTTCTGGTACCGTTAAGTTTGCTCACAGAGATTGTATACAGAGATGGTGCGACGAGAAAGGGAATACAATTTGTGAAATATGTCTCCAGCAATATGAGCCTGGATATACAGTATCTCCGAAGAAATCTCAAATAATTGATGCAGCAATGACCATTAGAGATAGCCTGCAAATTCCAAGGGAGCAAGAACCGTTGAGTTCAAGAATAGAGGCCATTGTTGAAGGAGTTCCAATACAAAGTGATTACTCTGAATGCACGTCTGCCGCTGATAGAAGTGCATCTTGCTGTCGAACATTGGCTTTGACTGCAAATTGTCTTGACTTGGAAATGAACGAGTCAAAGACTCAAAAGTTCACACTTGTCTTGCTGGTAAGACATCTTTACGCGGTACTTACAAGTAGAACGGAAGATTACCAATTTACACTTCTTACTGTCTTTATACTGAAAGCTTTCGGAATTATTCTACCAATGTACATAATTATAAAGGCTATCGGAGCTATTCACAGCGGCATTCGGCGCAACTATCAAGATTCTGACGATGAAGCATCAATGTCTGAGGGAGACGATGAAGAAAATGTCCCCCCACATGATATGACTTATAGACATTAA 726 0.4091 MEEVVLLVDDLKSLSGIPRCRICHEEEFESSESFEAPCACSGTVKFAHRDCIQRWCDEKGNTICEICLQQYEPGYTVSPKKSQIIDAAMTIRDSLQIPREQEPLSSRIEAIVEGVPIQSDYSECTSAADRSASCCRTLALTANCLDLEMNESKTQKFTLVLLVRHLYAVLTSRTEDYQFTLLTVFILKAFGIILPMYIIIKAIGAIHSGIRRNYQDSDDEASMSEGDDEENVPPHDMTYRH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0426 241 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Sto8g0426 241 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Sto8g0426 241 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 234 - -
Sto8g0426 241 SMART ringv_2 19 68 IPR011016 GO:0008270
Sto8g0426 241 CDD RING_CH-C4HC3_MARCH 20 67 - -
Sto8g0426 241 Pfam Protein of unknown function (DUF3675) 73 203 IPR022143 -
Sto8g0426 241 SUPERFAMILY RING/U-box 18 72 - -
Sto8g0426 241 MobiDBLite consensus disorder prediction 217 241 - -
Sto8g0426 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 79 IPR013083 -
Sto8g0426 241 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 234 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0426 Sto-Chr8 2657072 2659345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0426 20 67 C3H Transcription Factor Family AT5G05830 40.385 2.57e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0426 - - gmx:100797029 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0426 8 2657072 2659345 Sto13g3690 13 38915684 38918004 CCT
Sto8g0426 8 2657072 2659345 Sto8g0426 8 2657072 2659345 ECH