Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0410 ATGTCGAAGAGGAAGTTCGGATTCGAGGGCTTTGGCATAAACCGGCAATCAACCTATAATTTTGAACGATCTCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCGTCGCGCCACGGGCATGACAATTACGAAGATACTGATCTTGACAACATCGATTATGACGATAATGATGCTGCCAATGTCGGGAACAATAACAATGGCAGCAAGAACGATGATGACAACGAAGATATTGATCCCCTCGATGCTTTCATGGAAGGGATTCACGAGGAAATGAAGGCCGCGCCGCCTCCGCAGCCGAAGGAGAAGGTAGAGGACAGGTATAGAGATGATGATGAGGACGACCCGATGGAGAGTTTCTTGAGAGCGAAGAAGGATGTAGGTCTGACCCTGGCGTCCGACGCTCTGCAGGCTGGATATGATTCCGACGAGGAGGTTTATGCAGCTGCGAAGGCCGTAGACGCGGGAATGCTAGAGTATGATTCTGACGACAATCCTATTGTTGTCGATAAGAAGAAAATTGAACCAATACCTGCTCTGGATCACAGTTCGATTGAGTATGAGCCCTTTAACAAGGATTTTTACGAGGAGACGCCTTCAATATCAGGTATGAGTGAGCAAGATGTTGCTGAATATCGGAAGAGTTTGGCCATTCGCATATCAGGCTTTGATGTTCCGAAGCCAATTAAGACATTTGAAGACTGTGGTTTCTCTCCGCAACTTATGAATGCCATAAAGAAGCAAGCTTACGAGAAGCCAACATCAATACAGTGCCAAGCTCTACCAGTTGTGCTCTCTGGACGAGATATAATTGGTATAGCAAAAACTGGCTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAAGGTCCTATAGGAGTAATATGTGCCCCCACAAGAGAACTGGCACATCAGATATATCTGGAGTCCAAGAAATTTGCAAAGTCGCATGGGATACGTGTCTCTGCAGTCTATGGTGGGATGTCAAAACTTGAACAGTTCAAAGAGCTTAAGGCAGGCTGTGAGATAGTTATTGCTACCCCTGGCAGATTGATAGACATGCTTAAAATGAAGGCGCTTACAATGATGAGAGCAACTTACTTGGTCCTTGATGAGGCTGATAGGATgtttgaccttggatttgagccACAGGTAAGGTCCATTGTTGGTCAGATTAGGCCTGACCGCCAAACTTTACTTTTTTCTGCAACAATGCCTCGTAAAGTTGAGAAGTTGGCCAGGGAAATTCTTACTGATCCTATTAGAGTAACAGTTGGGGAGGTTGGAATGGCAAATGAAGATATAACTCAAGTTGTTCAAGTAATTCCTTCTGATTCAGAGAAGTTGCCGTGGCTTCTTGAGAAGCTGCCAGGAATGATTGATGAAGGTGATGTCTTAGTATTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGAATCGCAACTGGGTCAAAGAAGCTTTAAAGTTGCAGCTCTGCACGGTGATAAAGATCAAGCTTCTCGTATGGATATCTTGCAGAAGTTTAAATCTGGTACCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTCGACATCAAGTCAATTAAGTCAGTGGTGAACTTTGATATTGCAAAAGATATGGATATGCATGTGCATCGCATTGGTAGAACAGGTCGTGCTGGTGACAAAGATGGGATTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGTTTAATAGCAGCTGGTCAGAATGTGTCTATGGAGTTGATGGATCTAGCTATGAAGGATGGGAGATTCAGGTCTAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGTAAAGGGAGAGGAGGTAGTGGCAGTGGTCGAGGTGTGCGAGGAGTGGATTATGGGCTGGGTATTGGATATAGTCCAGAGTCCAATAACCCTTCACCCAACACAGCTCCAAGTCGGTCTGCCACCGTAAATTCACTGCGAACTGGAATGATGGCTCAATTTAGGAGTAACTTCGTTGCTGCTTCATCAAACTCTCCAAGTCAAAGCTTCGGTAACAGTACAAGCATGCCTGCTAATAAGAGACCCACCCTCCCTGGCTTCGTATCTGGCGGGTCAATTGGCGGGGACATAAACACTAGTCGGACTCCTGCTTCTCCAGCAGTAAATGCCACTTTTCAGAACTCTGGAGCTAATGCTGGTCAGAAGAACGCAGACAGCTCCAGACCTAGAGAAAGGAGGAGACCTTCAGGTTGGGATAGATAG 2307 0.4495 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNDAANVGNNNNGSKNDDDNEDIDPLDAFMEGIHEEMKAAPPPQPKEKVEDRYRDDDEDDPMESFLRAKKDVGLTLASDALQAGYDSDEEVYAAAKAVDAGMLEYDSDDNPIVVDKKKIEPIPALDHSSIEYEPFNKDFYEETPSISGMSEQDVAEYRKSLAIRISGFDVPKPIKTFEDCGFSPQLMNAIKKQAYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKSHGIRVSAVYGGMSKLEQFKELKAGCEIVIATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLGQRSFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGIAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGSGSGRGVRGVDYGLGIGYSPESNNPSPNTAPSRSATVNSLRTGMMAQFRSNFVAASSNSPSQSFGNSTSMPANKRPTLPGFVSGGSIGGDINTSRTPASPAVNATFQNSGANAGQKNADSSRPRERRRPSGWDR 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0410 768 MobiDBLite consensus disorder prediction 614 669 - -
Sto8g0410 768 SMART ultradead3 248 450 IPR014001 -
Sto8g0410 768 MobiDBLite consensus disorder prediction 689 768 - -
Sto8g0410 768 MobiDBLite consensus disorder prediction 81 113 - -
Sto8g0410 768 MobiDBLite consensus disorder prediction 753 768 - -
Sto8g0410 768 MobiDBLite consensus disorder prediction 689 708 - -
Sto8g0410 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Sto8g0410 768 CDD DEADc_DDX42 240 436 - -
Sto8g0410 768 MobiDBLite consensus disorder prediction 13 31 - -
Sto8g0410 768 MobiDBLite consensus disorder prediction 653 669 - -
Sto8g0410 768 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Sto8g0410 768 CDD SF2_C_DEAD 447 579 - -
Sto8g0410 768 Pfam Helicase conserved C-terminal domain 473 569 IPR001650 -
Sto8g0410 768 Gene3D - 192 437 IPR027417 -
Sto8g0410 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 438 IPR027417 -
Sto8g0410 768 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Sto8g0410 768 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 657 - -
Sto8g0410 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Sto8g0410 768 SMART helicmild6 488 569 IPR001650 -
Sto8g0410 768 MobiDBLite consensus disorder prediction 721 752 - -
Sto8g0410 768 Gene3D - 438 613 IPR027417 -
Sto8g0410 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 608 IPR027417 -
Sto8g0410 768 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 657 - -
Sto8g0410 768 MobiDBLite consensus disorder prediction 1 113 - -
Sto8g0410 768 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0410 Sto-Chr8 2555819 2560864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0410 226 579 Eukaryotic Initiation Factors Gene Family AT3G19760 32.213 1.89e-61 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0410 K12835 - gmx:100814854 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0410 8 2555819 2560864 Sto8g0410 8 2555819 2560864 ECH