Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0375 ATGGCATCAGCGGGTGTAGCACCTGCTTCTGGATTAAGAGATGTAAATACGAATACAGTTGGCGTTGACAAGTTGCCCGAAGAGATGAATGATATGAAAATTAAGGACGACAAGGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACCGAAACGGGACATATAATTGTGACTACCATCGGTGGTAAAAACGGCCAGCCAAAGCAGACTATAAGCTACATGGCTGAGCGGATCGTTGGACAGGGTTCTTTTGGTGTAGTTTTCCAGGCAAAGTGCTTAGAGACGGGTGAAACTGTGGCTATAAAGAAGGTGCTTCAAGACAAGAGGTACAAGAATAGAGAACTGCAAACTATGCGTCTTCTTGACCACCCAAATGTTGTAGCTCTGAAGCACTGTTTCTTTTCGACAACTGAGAAAGATGAGCTTTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTCCATCGGGTGATTAGACACTACAATAAAATGAACCAAAGGATGCCATTGATATATGTGAAGCTTTATTCCTACCAAATACTGAGAGCACTTGCTTACATTCACAATAGTATTGGAGTGTGTCACAGAGACATTAAACCTCAAAATTTACTGGCTTTTGCCTTTTTCCCAAAGGTCAACCCTCACACCCACCAGCTGAAGCTGTGTGACTTTGGAAGTGCTAAAGTTTTGGTAAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCGGAGCTTATATTTGGTGCGACTGAATACAGTACAGCCATTGACATCTGGTCTGCTGGTTGTGTACTCGGTGAACTATTGCTTGGGCAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgttttgGGTACCCCAACAAGAGAAGAAATTAAATGCATGAATCCTAATTACACAGAGTTTAAATTTCCACAAATTAAAGCCCATCCTTGGCACAAGATCTTTCACAAGCGTATGCCACCTGAAGCCGTTGATCTTGTCTCAAGACTACTACAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTTATTCATCCGTTCTTTGATGAGCTGCGTGATCCAAACACTCGGTTGCCAAATGGGCGCTTCCTTCCTCCACTATTTAACTTCAAAGCCAATGAGCTTAAGGGAGTGCCTGGTGAGATGCTggtgaagctaattccacctcACGCAAGAAAGCAGTGTGCTTTGTTTGGTTCATCGTGA 1254 0.4219 MASAGVAPASGLRDVNTNTVGVDKLPEEMNDMKIKDDKEMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERIVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYSYQILRALAYIHNSIGVCHRDIKPQNLLAFAFFPKVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYSTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALIHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPGEMLVKLIPPHARKQCALFGSS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0375 417 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 414 - -
Sto8g0375 417 SMART serkin_6 73 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g0375 417 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 414 - -
Sto8g0375 417 ProSiteProfiles Protein kinase domain profile. 73 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g0375 417 CDD STKc_GSK3 68 367 IPR039192 -
Sto8g0375 417 Pfam Protein kinase domain 73 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g0375 417 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Sto8g0375 417 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Sto8g0375 417 SUPERFAMILY Protein kinase-like (PK-like) 72 388 IPR011009 -
Sto8g0375 417 Gene3D Transferase(Phosphotransferase) domain 1 153 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0375 Sto-Chr8 2392309 2394916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0375 79 371 MAP Kinase Gene Family AT3G45640 34.437 4.57e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Sto8g0375 Pkinase 3.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0375 K00924 - gmx:100788046 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0375 8 2392309 2394916 Sto8g0375 8 2392309 2394916 ECH
Sto8g0375 8 2392309 2394916 Sto13g3734 13 39181056 39188910 ECH