Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0348 ATGGGGAGGCACTCTTGCTGCTACAAACAGAAGCTTCGAAAGGGCCTCTGGTCCCCTGAAGAGGATGAGAAGCTCTTGAGGCATATTACCAACTATGGCCATGGCTGCTGGAGCTCTGTTCCTAAGCAAGcagGATTGCAGAGATGTGGAAAAAGCTGTAGGTTGAGGTGGATCAACTACTTAAGGCCAGATTTGAAGAGAGGCACATTCTCACAAGAAGAGGAAAATCTCATCATTGAGCTTCATGCAGTATGGTCTCAAATAGCAGCACAGCTGCCTGGGAGAACGGACAATGAAATAAAGAATCTGTGGAATTCATGCTTGAAGAAGAAGCTGAGGCAAAGAGGGATAGACCCCGTGACCCATAAGCCACTAGTGTGTGAGGTTGGAGACGACAAACACAAAGACAAACTCAATAATTCCTCCAATGAATTGAACCTCCTCAAATCAGAAAGCTCCAAGTCTGATGCTGATGCTGCTTCTGCTTCTTGCAATTCACTtccccctaaaccctatgcacCTCCTGACATGgaagcttcttcttccaccaccaccactttcACCCCTGATTCTTCTACCAAAGATAATTTCTTCCTCACCTACAACACTACTAGTTCTGATTTCATGCCCAATTTCCCACTTCACATCACTGACTCTTCTCGTTGGATCACCCAACAAACTCAAATAGCAGCACCAAGACCATTTCATATCAACTCTGATTTCAATAACAACATACTCCCCACTTCCAATATCATCTCCTGCAAGCCTCCATTCACACTTCCCTCTGATGATCTCTCTACGCCCTCCTTTGCTATGAATAATGGATCTCACTACTGGGGATGGACGGATTCTGGTAAAGAGGCTCATCAAATTCATATGAATATGGAGAGCCAAACAGAAGAAGCAAAGTGGGCTGAGTATTTTCATTATAATAACCCAATCTTAATGCTGGCTGCTGTACACAATCAAACCCCTGAATCCTTATGCAACAACGAGATGAAGCCATTGGTACCTGCGGATACTACTACTTTAGCAGCTATTTTGCctcataataataacaataagcACCAAgaacctccttcttcttcttcttctagtaTGTTTTCCAACAAGCTCACTGCAGCTTTTGGACATATATAG 1140 0.4 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITNYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLVCEVGDDKHKDKLNNSSNELNLLKSESSKSDADAASASCNSLPPKPYAPPDMEASSSTTTTFTPDSSTKDNFFLTYNTTSSDFMPNFPLHITDSSRWITQQTQIAAPRPFHINSDFNNNILPTSNIISCKPPFTLPSDDLSTPSFAMNNGSHYWGWTDSGKEAHQIHMNMESQTEEAKWAEYFHYNNPILMLAAVHNQTPESLCNNEMKPLVPADTTTLAAILPHNNNNKHQEPPSSSSSSMFSNKLTAAFGHI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0348 379 PANTHER HOMEODOMAIN-RELATED 1 250 - -
Sto8g0348 379 CDD SANT 69 105 IPR001005 -
Sto8g0348 379 ProSiteProfiles Myb-like domain profile. 62 108 IPR001005 -
Sto8g0348 379 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto8g0348 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sto8g0348 379 CDD SANT 17 61 IPR001005 -
Sto8g0348 379 Pfam Myb-like DNA-binding domain 67 107 IPR001005 -
Sto8g0348 379 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto8g0348 379 Gene3D - 11 65 - -
Sto8g0348 379 MobiDBLite consensus disorder prediction 158 189 - -
Sto8g0348 379 Gene3D - 66 114 - -
Sto8g0348 379 PANTHER MYB DOMAIN PROTEIN 55 1 250 - -
Sto8g0348 379 SUPERFAMILY Homeodomain-like 12 104 IPR009057 -
Sto8g0348 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 112 IPR017930 -
Sto8g0348 379 SMART sant 13 63 IPR001005 -
Sto8g0348 379 SMART sant 66 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0348 Sto-Chr8 2177505 2178823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0348 1 135 MYB Transcription Factor Family AT4G01680 88.652 2.86e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto8g0348 Myb_DNA-binding 5.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0348 K09422 - gmx:100819449 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0348 8 2177505 2178823 Sto13g3760 13 39370546 39371746 CCT