LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g0344	ATGGCTTCTTCATTCTCAACGCAGTTGCTGCAAACTCACAACCTATTTCCACGTCTTTCTCACTTCCAGGTTTTAGAGCAGAACGCCAAAGTGACAAACAAATGTTTCTTTGATGTTGATATTGGGGGCGAACCTGTAGGCAGGATTGTTTTCGGCCTATTTGGAGAGGTGATCAAGCTGAATAACTTTTGTGCAGGAGAGAAAGGATATGGTTACAAAGGATCCTCCTTCCACCGTATAATAAAAGATTTCATGATTCAGGGAGGGGACTTCACTGAAGGAGATGGAACTGGAGGAATCAGTATCTATGGCTCTAGTTTTGAAGATGAGAGTTTTGACTTGAAACATGTTGGTCCTGGAGTTTTGAGCATGGCGAATGCAGGTCCTAATAGCAATGGTAGTCAATTTTTCATTTGTACTGTAAAGACTCAATGGCTGGACAATCGCCATGTAGTGTTTGGACATGTCATTGATGGAATGGACGTCGTGAGGACGCTTGAATCCCAGGAGACAAGCAGGTACGACGGCCCAAAGAAACCATGCAGAATTATTAATTGTGGAGAATTGCCTCTAGAAGCCTGA	582	0.433	MASSFSTQLLQTHNLFPRLSHFQVLEQNAKVTNKCFFDVDIGGEPVGRIVFGLFGEVIKLNNFCAGEKGYGYKGSSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFDLKHVGPGVLSMANAGPNSNGSQFFICTVKTQWLDNRHVVFGHVIDGMDVVRTLESQETSRYDGPKKPCRIINCGELPLEA	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g0344	193	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	77	89	IPR002130	GO:0000413\|GO:0003755
	Sto8g0344	193	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	120	135	IPR002130	GO:0000413\|GO:0003755
	Sto8g0344	193	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	135	147	IPR002130	GO:0000413\|GO:0003755
	Sto8g0344	193	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	148	163	IPR002130	GO:0000413\|GO:0003755
	Sto8g0344	193	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	72	89	IPR020892	GO:0003755\|GO:0006457
	Sto8g0344	193	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	39	187	IPR002130	GO:0000413\|GO:0003755
	Sto8g0344	193	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	23	192	-	-
	Sto8g0344	193	SUPERFAMILY	Cyclophilin-like	30	189	IPR029000	-
	Sto8g0344	193	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	36	188	IPR002130	GO:0000413\|GO:0003755
	Sto8g0344	193	Gene3D	-	23	193	IPR029000	-
	Sto8g0344	193	PIRSF	Peptidylpro_ismrse	23	193	IPR024936	GO:0003755
	Sto8g0344	193	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC	23	192	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g0344	Sto-Chr8	2157621	2160194	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g0344	67	186	U-box Gene Family	AT5G67530	46.281	5.36e-26	102

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g0344	K03768		-	gmx:100785805	296.589