Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto8g0327 | ATGTCTTCTTCAAGACCTAGCCAGTCATCCAGCACCTCAGGAAGGTCAAGGCATAGTGCTAGAGTTATTGCTCAGACCACTGTAGATGCAAAACTCCACGCAAATTTTGAGGAGTCGGGTAGCTCCTTTGACTACTCGAGTTCAGTGCGTGTCTCCGGTACAGTGGATGGTGAGCATCAACCGAGGTCTGACAGAGTAACAACAGCTTACCTCCATCACATACAGAAAGGCAAGCTGATCCAGCCTTTCGGGTGCTTGCTAGCCTTAGATGAGAAAACTTGTAAGGTCATTGCATACAGTGAGAATGCTCCTGAAATGTTGACCATGGTTAGTCATGCTGTCCCTAGCGTGGGTGACCACCCTGCCCTTGGAATTGGGACAGATGTAAGAACCATTTTCACTGCCCCTAGTGCTTCTGCATTGCAGAAGGCGTTAGGATTTGGGGAAGTTTCACTTCTGAACCCCATTCTAGTCCACTGCAAGACCTCTGGGAAGCCCTTTTATGCTATCATCCATCGTGTTACTGGGAGTTTGATCATTGACTTTGAACCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCTGGTGCCCTTCAATCTTACAAGCTTGCAGCCAAAGCAATCACCAGATTGCAATCTTTGCCTAGTGGGAGCATGGAAAGGCTATGTGATACAATGGTTCAAGAGGTTTTTGAGCTCACAGGTTATGACAGGGTCATGGCTTATAAATTCCATGAGGATGATCACGGGGAAGTTATTGCTGAGATCACAAAGCCAGGTTTAGAGCCATATCTAGGTTTGCATTACCCGGCCACTGATATTCCACAGGCTGCACGTTTTTTGTTTATGAAGAACAAGGTTCGTATGATAGTTGATTGCCGTGCAAAACATGTGAAGGTGCTTCAAGATGAAAAGCTTCCAATTGAGTTAACCTTGTGTGGTTCAACCTTAAGGGCTCCCCATAGTTGCCATTTGCAATATATGGAGAACATGAATTCTATTGCTTCCCTGGTCATGGCAGTCGTGGTCAATGACAGCGATGAAGATGGGGACAGTTCTGATTCTGTCCAGCCTCAGAAGAGAAAGAGACTCTGGGGTTTAGTAGTTTGTCATAATACTACACCCAGGTTTGTTCCATTTCCTCTTAGGTATGCTTGTGAGTTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAGTTAGAGTTGGAATACCAGATTGTTGAGAAAAACATTCTACGCACCCAGACACTCTTATGTGATATGCTGATGCGAGATGCCCCCCTAGGCATTGTATCACAGAGCCCAAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAGCAAGGTATGGAGATTAGGAGTAACGCCAGGTGATACCCAGATTCGAGAGATAGCTATATGGCTCTCTGAGAACCATTTGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGATTCCCAGGTGCTCATACTCTTGGTGATGTAGTATGTGGAATGGCGGCCGTCAGAATATCTTCCAAAGACTTGGTTTTCTGGTTTCGGTCACATACTGCTGCAGAAATCCGATGGGGTGGTGCTAAGCATGAACCTGGTGAACAGGATGATGGCAGGAAGATGCATCCAAGATCATCATTTAAAGCTTTCCTTGAAGTAGTGAAGTCAAGGAGCCTACCATGGAAGGACTATGAAATGGATGCTATCCATTCGTTGCAGTTAATCCTGAGAAATGCATTCAAAGATACAGATAGCATGGATATAACCACCACTGCAATCAACACAAGATTAAGTGATTTGAAGATTGAGGGGATGCAAGAATTGGAGGCAGTGACAAGTGAGATGGTTCGGTTAATTGAAACTGCAACAGTGCCAATTTTGGCGGTTGATGTTGAGGGCCTGGTCAACGGGTGGAATACAAAAGTTTCTGAGTTGACAGGCCTTCCAGTTGATGAAGCAATTGGGAAGCATTTACTCACACTCGTTGAGGATTCTTCAATTGCTACGGTCAAGAAAATGTTGGACATGGCATTGCAAGGCAAAGAGGAGAAGAACGTCCAATTTGAGATCAAAACACATGCATCAAAGACTGATTCTGGTCCTATCAGCTTGGTTGTTAATGCATGTGCGAGCAGGGACCTTCGAGAAAACGTTGTGGGAGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAGCCCGAACCCATTGATTCCTCCAATATTTGGTACAGATGAATTTGGATGGTGCTGTGAATGGAATCCAGCAATGATGAAGTTAACAGGATGGAAGCGAGAGGACGTGATGGACAAAATGCTTTTAGGGGAGGTTTTTGGAACCAATATGGCTTGCTGTCGTCTAAAAAATCAAGAAGCATTTGTTAACTTTGGAATTATACTCAACAAAGCCATGACAGGCTTGGAAACTGAGAAGGTTGCTTTTGGCTTCTTTTCTCGGAATGGAAAGTATGTAGAATGCCTACTTTCGGTGAGTAAGAAGCTGGACATAGAGGGTGCAGTTACAGGTGTGTTCTGCTTCTTGCAGCTAGCTAGCCCGGAGCTGCAACAAGCATTACATATTCAACGCCTATCTGAGCACACTGCGTTGAAGAGACTGAAAGCTTTAACTTACATGAAAAGACAGATACGCAACCCTTTATGTGGGATTGTCTTCTCCCGGAAGATGTTGGAGGGTACTGAGTTGGGAGCTGAACAAATACAACTTTTGCGCACTAGTGCCCAGTGCCAGCGCCAGCTCAGCAAGATTCTTGACGACTCTGATCTTGACAAAATCATTGATGGGTACTTGGATCTGGAGATGGTTGAATTCACTCTGCATGAGGTACTGGTTGCTTCCCTCAGTCAAGTAATGACAAAGAGCAACGCAAAGGGTATCCGAATACTGAATGAAGTTGCAGAGCAGATCATGACAGAAACCTTATATGGTGATAGCCTTAGACTTCAACAAGTCTTAGCAGACTTCTTATTGATATCCATCACTTTTACACCTTCTGGAGGTAAGATTGTTGTAGAAGCCTCTTTAACCAAAGATCAGATAGGACGATCTGTCCATCTTGCCAATGTGGAGCTCAGCATAACACATGCTGGTAGTGGGATTCCAGAAGCATTGCTGAACCAGATGTTTGGAAATAATGGACAAGAATGTGAAGAAGGGATTAGCCTCCTCATCAGTAGAAAGCTGCTGAAGCTGATGAATGGAGATGTACGTTATCTAAGGGAAGCTGGCAAATCATCCTTTATCTTGACTGTTGAACTCGCTGCAGCCCACAAGTCCAGGGCTTAA | 3375 | 0.4453 | MSSSRPSQSSSTSGRSRHSARVIAQTTVDAKLHANFEESGSSFDYSSSVRVSGTVDGEHQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDVRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDEKLPIELTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDSDEDGDSSDSVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKSKVWRLGVTPGDTQIREIAIWLSENHLDSTGLSTDSLSDAGFPGAHTLGDVVCGMAAVRISSKDLVFWFRSHTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKDTDSMDITTTAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVEGLVNGWNTKVSELTGLPVDEAIGKHLLTLVEDSSIATVKKMLDMALQGKEEKNVQFEIKTHASKTDSGPISLVVNACASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQSPNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREDVMDKMLLGEVFGTNMACCRLKNQEAFVNFGIILNKAMTGLETEKVAFGFFSRNGKYVECLLSVSKKLDIEGAVTGVFCFLQLASPELQQALHIQRLSEHTALKRLKALTYMKRQIRNPLCGIVFSRKMLEGTELGAEQIQLLRTSAQCQRQLSKILDDSDLDKIIDGYLDLEMVEFTLHEVLVASLSQVMTKSNAKGIRILNEVAEQIMTETLYGDSLRLQQVLADFLLISITFTPSGGKIVVEASLTKDQIGRSVHLANVELSITHAGSGIPEALLNQMFGNNGQECEEGISLLISRKLLKLMNGDVRYLREAGKSSFILTVELAAAHKSRA | 1124 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto8g0327 | 1124 | Pfam | GAF domain | 218 | 401 | IPR003018 | GO:0005515 | |
| Sto8g0327 | 1124 | Pfam | PAS fold | 620 | 734 | IPR013767 | GO:0006355 | |
| Sto8g0327 | 1124 | Pfam | PAS fold | 750 | 872 | IPR013767 | GO:0006355 | |
| Sto8g0327 | 1124 | SMART | pas_2 | 749 | 818 | IPR000014 | - | |
| Sto8g0327 | 1124 | SMART | pas_2 | 619 | 685 | IPR000014 | - | |
| Sto8g0327 | 1124 | SUPERFAMILY | GAF domain-like | 409 | 587 | - | - | |
| Sto8g0327 | 1124 | PIRSF | Phytochrome_conventional | 1 | 1124 | IPR012129 | GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803 | |
| Sto8g0327 | 1124 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 318 | 327 | IPR013516 | - | |
| Sto8g0327 | 1124 | PANTHER | PHYTOCHROME A | 1 | 1120 | - | - | |
| Sto8g0327 | 1124 | SMART | HKATPase_4 | 1006 | 1118 | IPR003594 | - |
Showing 1 to 10 of 47 entries
Duplication type information
Functional genes information
Pathway information
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto8g0327 | 8 | 2063999 | 2068041 | Sto13g3782 | 13 | 39473168 | 39477888 | CCT | |
| Sto13g3777 | 13 | 39451354 | 39456391 | Sto8g0327 | 8 | 2063999 | 2068041 | ECH | |
| Sto8g0327 | 8 | 2063999 | 2068041 | Sto8g0327 | 8 | 2063999 | 2068041 | ECH |
Showing 1 to 3 of 3 entries