Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0316 ATGGGCAAGTTTGGGGATTTGGACTCTGGGTTCAATGAAATTCCAAGGTCAGTTCCTTCGGGTGAACTTGATTTGAGTCAAGATGAAGACATGATACCTTGGTTGAATTATACAATGGATGACTCATTACAACATGAATATAGTTCTGATTTCATGCGTGATCTATCTGGGATCACCGTCAATGAGCTCCCGCCCTCAAGTAATTTTGCTTTGATGGATAAAGGAGGTAACTGCAGTCAGATATATAAGGACTCTCATAAAAATCTTGCGCGTGATGTTTCAAGTTCAGAACGAGCAAACCAGACCAAGGGTTCTTCAGCTGAAGATGTTGAGACTACTAGACCTAACAGGAGTACCAGTCAGTTGTACCCACCATCATCACAGCAATGTCAACCATCATTTGCATCTTTTAGGTCCAAAGTATCAGATATCACTGGAACTAATACAAGTAATGCAATTCACCAAGCATCTTGTGGGGAACCCACTCATATTCCATCTACCTCCAGTGGCTTTTGTAGCTTAAATATGCAGAAGCAAGATCCATTGTTGCCCAGTAATAGTTCCAACATATTGAATTTCTCCCATTTTGCAAGACCTGCTGCTATTGTGAAAGCTAATCTTCAGAGCATCAGTTTGATGTCTGGTTTGTCTTCAGTAAGATCAGAAAGCATGGGAACTAAGAATAAAGATGTTAATGTAACTAGCAGCCACCGTCCGGAGTCAACACTTGTTGATTCAAGGGGTAAAAAGAACTGCCAGCTGGTTATGGATCCATCAAAGGCTGAATTGGAACAGTCAGAACCAAAATCTCTTGAACAGAAAGCTGCTCCTGCAAAACAGTCTGATCCTGCCTGCGAACAGGAGGATGCCTTTAAGAATGATCAAATTGCCAATCAAGTTCTCTGTGAAAGTGCCACTAAAGGACAGAAAGATATTGAAAAAGTCATGGACCCTGTAGTAGCCTCTTCCTCCATTTGCTCAGGCAATGGTATGAAGAGATGTTCAGATGATCCAACTCAAAATTTTAAGCGAAAAAATCGAGATACTGAGGACTCTGAGTGCCACAGTGAAGAAGTTGAGGAAGAATCGGTGGGTATTAAAAAGGCAGCTCCTGCACGAGGTATGGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAACGAGAAGATGCGTGCATTACAAGAACTTATACCAAATTGCAAtaagATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACACCCTGGAATGCAGCACATGCATGCACCACGTATGGCTCCATTCTCACCTATGGGAGTTGGCATGCAAATGGGATTAGGAATGGGTTATGGGATGAATATATCTGACATGAATAGTGGATCATCTAGATTCCCAATGCTTCAGGTGCCCCAAATGCAAGGAACTCATTTCCCTGTTTTACCTATGACTGGACCCACTGCTTTACATGGGATGGCAAGATCAAATGCTCAACTGTTTGGGTTTCCAGGTCAGGGACTCCCCATGCCGATGCCACATGCTCCCGCAGTCTCTTTGTCAGGAGGGCCTCCTATGAACCCATCAACTTCGGGATCAAATGCATGTGGAGCTGCAGGACTTGTAGAAACTGTAGATTCGGCTTCAGCCTCTGGCTTAAAGGATCCATTGCCAAATGTGAACTCACTTGTTATGCCACCTACAGGTGGCAGTAACTCTACAAGCCAGATGTCTACACAGTGTGAAGCAACAAATGCTGGAATTGATCAATCGGCATTGGTGCAAAGTAGCGGGGATCCCTCCAATGTTAATGATAGTGGACCTGCTAATCCTGGCAAAGAAGATAAACTTGTGATAGGCTATGACTGA 1887 0.4351 MGKFGDLDSGFNEIPRSVPSGELDLSQDEDMIPWLNYTMDDSLQHEYSSDFMRDLSGITVNELPPSSNFALMDKGGNCSQIYKDSHKNLARDVSSSERANQTKGSSAEDVETTRPNRSTSQLYPPSSQQCQPSFASFRSKVSDITGTNTSNAIHQASCGEPTHIPSTSSGFCSLNMQKQDPLLPSNSSNILNFSHFARPAAIVKANLQSISLMSGLSSVRSESMGTKNKDVNVTSSHRPESTLVDSRGKKNCQLVMDPSKAELEQSEPKSLEQKAAPAKQSDPACEQEDAFKNDQIANQVLCESATKGQKDIEKVMDPVVASSSICSGNGMKRCSDDPTQNFKRKNRDTEDSECHSEEVEEESVGIKKAAPARGMGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKIMSMGAGLYMPPMMLHPGMQHMHAPRMAPFSPMGVGMQMGLGMGYGMNISDMNSGSSRFPMLQVPQMQGTHFPVLPMTGPTALHGMARSNAQLFGFPGQGLPMPMPHAPAVSLSGGPPMNPSTSGSNACGAAGLVETVDSASASGLKDPLPNVNSLVMPPTGGSNSTSQMSTQCEATNAGIDQSALVQSSGDPSNVNDSGPANPGKEDKLVIGYD 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0316 628 MobiDBLite consensus disorder prediction 89 130 - -
Sto8g0316 628 MobiDBLite consensus disorder prediction 1 25 - -
Sto8g0316 628 MobiDBLite consensus disorder prediction 220 287 - -
Sto8g0316 628 PANTHER TRANSCRIPTION FACTOR PIF3 1 585 - -
Sto8g0316 628 MobiDBLite consensus disorder prediction 337 367 - -
Sto8g0316 628 MobiDBLite consensus disorder prediction 570 614 - -
Sto8g0316 628 PANTHER TRANSCRIPTION FACTOR PIF3 1 585 IPR044273 GO:0003700|GO:0006355
Sto8g0316 628 Pfam Helix-loop-helix DNA-binding domain 385 409 IPR011598 GO:0046983
Sto8g0316 628 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 381 438 IPR011598 GO:0046983
Sto8g0316 628 Gene3D - 375 421 IPR036638 GO:0046983
Sto8g0316 628 MobiDBLite consensus disorder prediction 94 130 - -
Sto8g0316 628 MobiDBLite consensus disorder prediction 220 241 - -
Sto8g0316 628 MobiDBLite consensus disorder prediction 326 390 - -
Sto8g0316 628 MobiDBLite consensus disorder prediction 555 628 - -
Sto8g0316 628 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 378 416 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0316 Sto-Chr8 2016665 2020001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0316 12 481 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 32.353 7.99e-44 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g0316 HLH 7.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0316 K12126 - gmx:100794974 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0316 8 2016665 2020001 Sto8g0316 8 2016665 2020001 ECH