Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0311 ATGACTAGAAAGAAGGTGAATCTTGGGTATATCTCCAACGATGCTGCAAGAAAAATAACATACAGGAAAAGGAAGAAAGGTTTATCAAAGAAGGTGAGTGAACTAACTACACTTTGTGGGATTGAAGCATGTACTGTTGTTTTCAGCCCATATGAGTCTCGTCCCGAGGTTTGGCCAAATCAAAATGGAGCCCACCAGGTGATCACAAGGTATCAGAATGAGCCAGTGATTGATCAAAGGAAGAATTTGAATCAAGAGAGCTATGTTAGGCAAGGGATCACCAAAGTTAGTGACCAGCTCCAGAAGCAGCTTAAGGAGAATCGTGAGAAAGATATGACTATAGCTATGTTCCAGTGCGTTGAAGGGAAGAGCTTGGATGACATGACGATGGCGGATTTGAATGACCTGGACAACCATATCGAGAAGAGCATAAATGAGGTCTTGATGTTATTTACAATTTCACAATTTGCATTATCTAATACAAATGTAATCTTGTTTTTAGGCATATCATATCGTACAAGAACTATGAGATCTTAG 537 0.3966 MTRKKVNLGYISNDAARKITYRKRKKGLSKKVSELTTLCGIEACTVVFSPYESRPEVWPNQNGAHQVITRYQNEPVIDQRKNLNQESYVRQGITKVSDQLQKQLKENREKDMTIAMFQCVEGKSLDDMTMADLNDLDNHIEKSINEVLMLFTISQFALSNTNVILFLGISYRTRTMRS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0311 178 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g0311 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto8g0311 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Sto8g0311 178 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Sto8g0311 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 147 - -
Sto8g0311 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g0311 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g0311 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g0311 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 147 - -
Sto8g0311 178 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sto8g0311 178 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0311 Sto-Chr8 1996728 1997453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0311 1 147 Type I MADS-box Gene Family AT5G48670 48.322 7.23e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g0311 SRF-TF 4.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0311 - - ecad:122610879 179.874