Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0310 ATGCTCTTCACAGAAGAGCCAGGATTATCCAGACATGAAATTGAGTTTTCTGCAATAATTTTCGATCGTGCTTTGACTGTTCCGTTGCTGAAGGCGGGAGGCCTCCCCGCTTTCCAACTTCAGATCTCAGAGCTTCTTCGGCCTTTGAGTGAGTCAATAAACTCAAATATGTCCAGTTTCTTCAGAGCCTCAAGGCCTAGAGTGAGATTTGAATACATAAGCAATGAGGGTGCGAGACGATCATCGTTCAAGAAGAGAAAGGAGGGTGTGATGAAAAAGATGAGTGAGCTGACAACTTTATGTGGGATCGAGGCTTGTGCTGTGATCTTCAGTCCGTTCAATCCGGGGCCAGAAGTATGGCCCAACGTAATGGGAGTCCACCACGTGGTTTCTCAATACAGAAAGATGGCGGGGATTCAGAAGAGAAGTGTTCTGGACCAGCAGAGTTTTATCAAGCAAACAATTGCCAAAACCATGCATCAGCTGGAGAGGCTTCGGAAGGAGACAAGGGAAAGACAGACGGAGTATTTGATGCACCAATGTATGGCTGGCATGAATTTGCGGAGCTTGTCCATATCGGACATGTATTGTACTAGGAGGCTCCTCGAGAAGAAGATAGCGGATATAGACAAGAAGATAAGGGAGAAGGAAGAGGTACCGCCTACACCAACTGCTGCATCACTGGATGATAATGGACTGCACTTGGCTTTTGGAGATATCAGTCAGGAGGAGAATGCGTTTTGGTTCAAGTTATTCCCTTGA 762 0.4646 MLFTEEPGLSRHEIEFSAIIFDRALTVPLLKAGGLPAFQLQISELLRPLSESINSNMSSFFRASRPRVRFEYISNEGARRSSFKKRKEGVMKKMSELTTLCGIEACAVIFSPFNPGPEVWPNVMGVHHVVSQYRKMAGIQKRSVLDQQSFIKQTIAKTMHQLERLRKETRERQTEYLMHQCMAGMNLRSLSISDMYCTRRLLEKKIADIDKKIREKEEVPPTPTAASLDDNGLHLAFGDISQEENAFWFKLFP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0310 253 ProSiteProfiles MADS-box domain profile. 63 111 IPR002100 GO:0003677|GO:0046983
Sto8g0310 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 72 112 IPR002100 GO:0003677|GO:0046983
Sto8g0310 253 SMART madsneu2 63 122 IPR002100 GO:0003677|GO:0046983
Sto8g0310 253 Coils Coil 152 172 - -
Sto8g0310 253 SUPERFAMILY SRF-like 64 140 IPR036879 GO:0003677|GO:0046983
Sto8g0310 253 Coils Coil 199 219 - -
Sto8g0310 253 CDD MADS_SRF_like 65 136 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g0310 253 PRINTS MADS domain signature 65 85 IPR002100 GO:0003677|GO:0046983
Sto8g0310 253 PRINTS MADS domain signature 85 100 IPR002100 GO:0003677|GO:0046983
Sto8g0310 253 PRINTS MADS domain signature 100 121 IPR002100 GO:0003677|GO:0046983
Sto8g0310 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 65 222 - -
Sto8g0310 253 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 65 222 - -
Sto8g0310 253 Gene3D - 75 182 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0310 Sto-Chr8 1992318 1995248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0310 64 213 Type I MADS-box Gene Family AT5G48670 43.421 2.55e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g0310 SRF-TF 5.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0310 - - ini:109185585 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0310 8 1992318 1995248 Sto8g0310 8 1992318 1995248 ECH