Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0280 ATGCCATTGGGGAAATATTACTGCGACTATTGCGACAAGCTCTTACAAGACACCCCTACTGCTCGGAAACGACACCTTCAGGGCATCCAGCACCTCCGTGCCAAGGCTCTTTGGTACGATTCCATCAAATTTCAAGATCCAACACAGGTTTATCCACAGGCGTTAGGCAAAGGGATTTGCAATCGCTTCCTCAAAACGGGTTTTTGCCACTACGGCGATTCTTGCAAATATGTTCATCCGAAAAGCTTGCTCAATGCCAACCCTCATGGAGTATTATTCGATAATATACAGTCAGCTGCAGTAACCATGGGGAGTCATCTGGTTAGCGGAAGTTCCACATCAGGCAATGTGGTACAAGATAGTATGGAAATGTCATGGGGCAATTTACCTCCGTCTCTGAAGCCTCCTCCTGAAGGTGGATATCCACCTCTTCCCTTTGTGGACTGGGGATAG 453 0.4746 MPLGKYYCDYCDKLLQDTPTARKRHLQGIQHLRAKALWYDSIKFQDPTQVYPQALGKGICNRFLKTGFCHYGDSCKYVHPKSLLNANPHGVLFDNIQSAAVTMGSHLVSGSSTSGNVVQDSMEMSWGNLPPSLKPPPEGGYPPLPFVDWG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0280 150 Gene3D Classic Zinc Finger 3 50 - -
Sto8g0280 150 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Sto8g0280 150 Gene3D - 51 116 - -
Sto8g0280 150 Pfam U1 zinc finger 5 37 IPR013085 GO:0008270
Sto8g0280 150 SUPERFAMILY CCCH zinc finger 55 82 IPR036855 GO:0046872
Sto8g0280 150 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 81 IPR000571 GO:0046872
Sto8g0280 150 SUPERFAMILY beta-beta-alpha zinc fingers 4 44 IPR036236 -
Sto8g0280 150 PANTHER NUCLEASE-RELATED 1 150 - -
Sto8g0280 150 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Sto8g0280 150 SMART c3hfinal6 56 81 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0280 52 96 C3H Transcription Factor Family AT1G04990 48.889 9.67e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto8g0280 zf-U1 1.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0280 K13152 - vvi:104881371 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0280 8 1825521 1827170 Sto8g0280 8 1825521 1827170 ECH