Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0253 ATGGAGGATGTTGAGAGATTTAAGCCTAGGCTTTCTTGTTCCCAAGATGCTCATCACCTCTCTCCTTCTGAACCGCTGGATGCCCATCCCCAAATGCCCGACCCGGATCACCAGCTCATCAAGACCCAAATCGCCAATCATCCTCTTTATCCTAATTTACTATCTGCATACATTCAATGCCGGAAGGTTGGAGCTCCACCACAACTGTCCTCCCTTCTTGAAGAAATAAGCCGCCAAAACCACCCCACCATTCCGATTGGGGATGATCCTGAGCTTGACCATTTCATGGAAGAGGAAAAAGTGAAGCTATCAGAAGTGAGTGGTCTGAATCAAAAGCAGATAAATAATTGGTTTATCAATCAGAGGAAACGCCACTGGAAACCATCAGAAGATATGAGATTTGGCATCATGGGTGTAAGTGCAGGCTCTGTCTACTTTGATTCTCTACCTCCACCTCCACCTCAATCTCATCACTCATAA 480 0.4583 MEDVERFKPRLSCSQDAHHLSPSEPLDAHPQMPDPDHQLIKTQIANHPLYPNLLSAYIQCRKVGAPPQLSSLLEEISRQNHPTIPIGDDPELDHFMEEEKVKLSEVSGLNQKQINNWFINQRKRHWKPSEDMRFGIMGVSAGSVYFDSLPPPPPQSHHS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0253 159 Gene3D - 17 132 - -
Sto8g0253 159 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Sto8g0253 159 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 97 - -
Sto8g0253 159 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 97 138 - -
Sto8g0253 159 SMART HOX_1 59 132 IPR001356 GO:0003677
Sto8g0253 159 MobiDBLite consensus disorder prediction 1 36 - -
Sto8g0253 159 SMART KNOX1_2 38 82 IPR005540 GO:0003677|GO:0005634
Sto8g0253 159 CDD homeodomain 66 129 IPR001356 GO:0003677
Sto8g0253 159 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 29 97 - -
Sto8g0253 159 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 97 138 - -
Sto8g0253 159 SUPERFAMILY Homeodomain-like 97 138 IPR009057 -
Sto8g0253 159 Pfam Homeobox KN domain 97 124 IPR008422 GO:0003677|GO:0006355
Sto8g0253 159 ProSiteProfiles 'Homeobox' domain profile. 97 128 IPR001356 GO:0003677
Sto8g0253 159 Pfam KNOX1 domain 40 81 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0253 Sto-Chr8 1697339 1699959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0253 39 97 Homeobox Transcription Factor Family AT1G23380 52.941 5.00e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0253 - - var:108324363 102.834