Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0237 ATGGGCAAGAAGGTTGTGCAGAAACGGCCGTCCACTACCTCTACAAGAGGTCGTAAAAGAAGGAAGAATTCTAGAGTTGCAAGGAAGCCCttgagaaagaagagaagaaagaatggAGGGTTGAGGAGGAAAGTAAAATGTGAAGATGAGGGTGATTTTATTGATAATGGCCCAGCCATCAGAACCAAGAGTAGGAAAAAACCAAGCCGAAAAAGGAGAAGACTTGCCGATCCAGATTTGTCTTCTGGATCATCTGATTATGAATATACCATCTCTGAAGAAGAGAGGGAACAGATAAGAGAAGCCGAGGAATTGTGTGGAAGGTTGAGAACGAATTTGAGGAGTTCATCCCTTCTGACACAAAATGAAGAGAGATTTAAAACGATCAGTAAGCCTGCACGATCAACCACAGCGGGAGTTGATTTGAGAGGATCGGTGATACAAGTTCCTGAACGGGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCTTATGAGTATGTAATTTGTTCAGAGTGCCATCAAGGTGGAGACGATGGCCTTATGTTACTTTGTGATCTCTGTGATTCACCTGCACACACATATTGTGTTGGACTAGGCCGAGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAGTTCCCAAGTTCAAGAAGGTGGGGCTGATCCAAGGGTGACAATCCAGAGCCTGCCTGGTAGACCATCACCTGTTGTACATGCAAGAGAAAGTATAGACCTCAACTTGATCTCTTCACCTCGTCCATCTTTTAATCAAGGATTTGGGAATCTTTCTAGATTTTCTGGTAGAACTGCCGAAGGAGCTTCTCCAGTATCTGGAGGAGGGGCGCCAACTTTATCGGAGAGACGGTGGATACACCGTCAAATTCAACAGCTACTTTCAATGGATAGAATGGCTTCTACAACCGGCAGATCTAATGGGATTTTAGCTACCAATTCAACTAGTAACTTATATAGCTCTCAAAACGATCAAAGTAGGGAAACAACCACACAAGATACAAGGACACAGGATGCAGGAACATCGTATCACACATTCTTTGAGGAGAGATTATGCAATAATACCTCTCCTTTAATGCAGAATGGAGATCTCTTTTCCATGAGAGTAAACAATTCAAGAAGGCCAGTGGTTCAAGATTCAACTCCATTTACTAACAGGGTTGTGAATGGGGCGTTGTGGCCTGGACTTGTGGGGACACCGCCTGTTTCAGATTATGAACAAATCCATCAGCTCAGTAGCAGTTCAAACATTGTCACCGATTGTAGTGTGTCTCCTGCTATTAGAGAAGAGAGTAACTTTCACATTGCAAAGGAACAATTGTCATCAATGGTTAAAGGCCACCTGATGAACATGTCACGAGATATTGATTTAGGCAACAGCACTGTGAAGGACATCACAATGATATCTGTAAACAGCATACTAGCAGCTTGTGGTCTTGAGCATAAGAAGAATGAGGTTCCTCCTATAGCAGGGTATGAACTTGTTGATCGTGCAGAAGAGAAGACGGACTCCAGgcaaatttcaaatttcaaagggCTTTTAGGAAATTGGGGCAGCTGGGAACTGACAAGTTCATCAGCTATAGGTAATATAAATGATGACAACAAAGGATCAGGTGCCGCATTGGACAAGGAGGCTAGACATGAGGACCCGCCAAAAAGGGATTGCAAATTTCCTTCTTGCAGCTCTTTCCTCAATAAAGATAGTGTTGTGGTTATGTGTGTGGCCATATCAACCTCCACCCTCAATGAACAAACTGGACATACCTGCGTACAGAAATGCTGGAATCAGAAAAAGTAA 1857 0.4233 MGKKVVQKRPSTTSTRGRKRRKNSRVARKPLRKKRRKNGGLRRKVKCEDEGDFIDNGPAIRTKSRKKPSRKRRRLADPDLSSGSSDYEYTISEEEREQIREAEELCGRLRTNLRSSSLLTQNEERFKTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGGADPRVTIQSLPGRPSPVVHARESIDLNLISSPRPSFNQGFGNLSRFSGRTAEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMASTTGRSNGILATNSTSNLYSSQNDQSRETTTQDTRTQDAGTSYHTFFEERLCNNTSPLMQNGDLFSMRVNNSRRPVVQDSTPFTNRVVNGALWPGLVGTPPVSDYEQIHQLSSSSNIVTDCSVSPAIREESNFHIAKEQLSSMVKGHLMNMSRDIDLGNSTVKDITMISVNSILAACGLEHKKNEVPPIAGYELVDRAEEKTDSRQISNFKGLLGNWGSWELTSSSAIGNINDDNKGSGAALDKEARHEDPPKRDCKFPSCSSFLNKDSVVVMCVAISTSTLNEQTGHTCVQKCWNQKK 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0237 618 MobiDBLite consensus disorder prediction 1 94 - -
Sto8g0237 618 MobiDBLite consensus disorder prediction 557 574 - -
Sto8g0237 618 Coils Coil 92 112 - -
Sto8g0237 618 SMART PHD_3 174 219 IPR001965 -
Sto8g0237 618 MobiDBLite consensus disorder prediction 42 62 - -
Sto8g0237 618 MobiDBLite consensus disorder prediction 323 357 - -
Sto8g0237 618 PANTHER F18C1.6 PROTEIN 8 122 - -
Sto8g0237 618 PANTHER F18C1.6 PROTEIN 124 507 - -
Sto8g0237 618 Pfam PHD-finger 174 220 IPR019787 -
Sto8g0237 618 SUPERFAMILY FYVE/PHD zinc finger 144 220 IPR011011 -
Sto8g0237 618 ProSiteProfiles Zinc finger PHD-type profile. 172 221 IPR019787 -
Sto8g0237 618 MobiDBLite consensus disorder prediction 552 574 - -
Sto8g0237 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 229 IPR013083 -
Sto8g0237 618 MobiDBLite consensus disorder prediction 13 41 - -
Sto8g0237 618 PANTHER F18C1.6 PROTEIN 8 122 - -
Sto8g0237 618 PANTHER F18C1.6 PROTEIN 124 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0237 Sto-Chr8 1596652 1603305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0237 169 218 C2H2 Transcription Factor Family AT3G01460 46.154 1.66e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto8g0237 PHD 2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0237 - - gmx:100797448 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0237 8 1596652 1603305 Sto8g0237 8 1596652 1603305 ECH