Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0206 ATGAGCAGCCGGTCAAGTCGCACCATCTATGTTGGCAATCTTCCAGGTGATATTCGCATGAGAGAAGTGGAGGATCTTTTTCACAAGTATGGCCCCATTGTTGACATCGATTTGAAAATCCCTCCAAGACCACCAGGCTATGCTTTTGTTGAGTTTGAGGATCCCCGTGATGCTGAAGATGCAATTCATTATCGAGATGGTTATAATTTTGATGGTTTTCGTTTACGAGTTGAACTTGCACATGGTAGGCGAGGATCTTCATCATCAGTAGACCGCTATAGTAGTTATAGTGGTAGTGGTGGTAGCCGTGGAGTTTCCAAGCGTTCTGACTATCGTGTTCTGGTCACTGGGTTGCCTCCTTCGGCTTCTTGGCAAGACTTGAAGGATCACATGCGTAAAGCTGGTGATGTATGTTTCTCTCAAGTCTTCCGTGAGCGGGGTGGCATGATTGGGGTAGTGGATTATACTAATTATGATGATATGAAATATGCTattAGGAAACTTGATGACTCAGAATTCCGTAATGCCTTCTCTCGGTCATATATACGGGTATGTAGTGATAATCTTTTCCCTGTTTTGAGGTGGCTTGTTAGTTTGATGATTCTTTCTAGACCACCATTTGACTCTGGCACAGAGAAGAATGATTGGAATATGATCGACGAAGTTATTCTAGGAGTCCTAGCCGTGATTCAAGGAGGAGCTATTCTAGAAGTCCCAGCCGCAGTCCTTATTTGTCCCGAAGTCGAAGTCGTAGCTATAGCAGCAGGAGCCGAAGCTTGTCTCCAAAGGCAAAACATTCACAAAGATCATTATCAAGATCTCTGTCAAGATCTAGATCACCAAATTCTTCTCCTCGGCCTCTCAAAAGTCGCAGTCCTAGCCGAAGTCCAAGACGCTTTTCAAAATCTCCTTCTCCTTCAGACAGCAGACAGCTACATGGTTACAGATGCTGGTCTGTGTTTGGCATGGACGTTTAGTTCTGCGCCTGTGATATTGGtttgcttttttattttatgggaCTTTGATCATTTTCTGCACATTCCCATTCAATGTGAATTCTGTCGAAGATTTGGTAAGGCTTGCTTGACGAGCGGAATTCTAGCGGATGATGATGGTTGCTTTGAGAACAATATCGTGATTATTGCTCAGTCGGTGCCACGACTATTTGCTGTGATGTTGCTCCTGAGCTGA 1191 0.4366 MSSRSSRTIYVGNLPGDIRMREVEDLFHKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIHYRDGYNFDGFRLRVELAHGRRGSSSSVDRYSSYSGSGGSRGVSKRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMIGVVDYTNYDDMKYAIRKLDDSEFRNAFSRSYIRVCSDNLFPVLRWLVSLMILSRPPFDSGTEKNDWNMIDEVILGVLAVIQGGAILEVPAAVLICPEVEVVAIAAGAEACLQRQNIHKDHYQDLCQDLDHQILLLGLSKVAVLAEVQDAFQNLLLLQTADSYMVTDAGLCLAWTFSSAPVILVCFFILWDFDHFLHIPIQCEFCRRFGKACLTSGILADDDGCFENNIVIIAQSVPRLFAVMLLLS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0206 396 CDD RRM1_SF2_plant_like 8 79 - -
Sto8g0206 396 Gene3D - 1 110 IPR012677 -
Sto8g0206 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 184 IPR000504 GO:0003723
Sto8g0206 396 SMART rrm1_1 8 78 IPR000504 GO:0003723
Sto8g0206 396 SMART rrm1_1 112 183 IPR000504 GO:0003723
Sto8g0206 396 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Sto8g0206 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Sto8g0206 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Sto8g0206 396 Gene3D - 111 188 IPR012677 -
Sto8g0206 396 MobiDBLite consensus disorder prediction 85 106 - -
Sto8g0206 396 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 2 195 - -
Sto8g0206 396 MobiDBLite consensus disorder prediction 87 104 - -
Sto8g0206 396 CDD RRM2_SF2_plant_like 111 184 - -
Sto8g0206 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Sto8g0206 396 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0206 Sto-Chr8 1406275 1410905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0206 8 83 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 4.58e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0206 K12890 - gmx:100794282 320.087