Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0191 ATGTCGAACAACACAAGTGGTGAGAGTGGGAGCTTGTGCACAGAGAAGGGCGGAGGAGAAGATGGAGGTAAACAGGCATCGGAGATATTTGGTCAGTTTCATAGTCCAAATTCTCTTACTTCAACCACAACTAATAGTAATGGTTCCAAcactcctcctcctccacctccTAAGAGGAAGAGAAACCTACCAGGAAATCCAGaTCCAAGCGCGGAAGTAATTGCTCTGTCACCAAACACCCTAATGGCGACAAACCGATTCATCTGCGAAATATGCAACAAAGGGTTCCAGAGAGATCAAAACCTGCAATTGCACCGACGAGGGCACAATCTGCCATGGAAGCTGAAGCAAAGAAGCAGCACAGAAATTCGAAAGAAGGTATACGTGTGTCCTGAAGCCTCGTGTGTGCACCATAACCCAGCTCGAGCACTGGGTGATCTCACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAATGGAAGTGTGACAAATGCTCCAAGAAATACGCAGTCCAATCTGACTGGAAAGCCCATTCTAAGATCTGCGGTACGAGGGAGTACAAGTGTGATTGTGGCACCATCTTTTCCAGAAGAGACAGCTTCATCACGCATAGAGCATTCTGTGACGCTTTGGCGGAGGAGAATAACAAAGGCATTATGAATATTGAACAGCAAATGCCAAGAATGATGAGCCCGAACTTGCAAGGACAACAACTCCAAAACCTGGTTGCTTCATTACCAATCAATGCCAATATTCCCAACCCACAAATTGGGAGCTTAATGGATAATACCAAGCATCATCCATTGTCAATGTTTCAGGAGCTGATGCCAATgccagcagcagcagcagcagcaaatAAAgcctttaataataataataataatatgaatatgaataatGGTGCAGGAGGAGGCCTTTTCACTCGATCAGCTTCGTCAGCACCATCCCTTCAACTCAGTTCAAACTCAGTAAACGTGTTCGAAGACAATAATGTTGGGCATCATCCACTCATGTCGGCCACGGCGCTCCTGCAGAAAGCTGCTCAGATGGGCGCAACTGTGAGTAGTAATGGCGGCGCTATGATGAACTCTAGGGCGGCGGAAAAGGGTTTTGTTGTGACAAGCATGGCGCCTGCGTCATTCGGTACGTCAGATCAGCATTCCTTCATGAACAACCACAACCACTATATGCAGATGATGAATGGGGAAGGTGAACAGCAGGAACATATATATGGGATGAACGGTGTGGATATGTTCAACGCTATTTTGGATCAGAGTAAGGCATTCTCCAAGATGATGGAGGAGAATAATAATGGAGTGTTGTCAAGTACTGGCGGTGGGGCTATTAATAAGGGAAGCGGGGATGTGATGACTCTGGACTTCTTGGGgataggaggaggaggaggacatGCCAACTTCTATGGGACACAACACCAAGCTGTGGCAGAAAAGGGTACAAGAGACGAGGTTTGGAGAAACTGGTCAACCAAGAATAATAATGCAGCAGGATttgaatcattaattaattga 1539 0.4288 MSNNTSGESGSLCTEKGGGEDGGKQASEIFGQFHSPNSLTSTTTNSNGSNTPPPPPPKRKRNLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSTEIRKKVYVCPEASCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKGIMNIEQQMPRMMSPNLQGQQLQNLVASLPINANIPNPQIGSLMDNTKHHPLSMFQELMPMPAAAAAANKAFNNNNNNMNMNNGAGGGLFTRSASSAPSLQLSSNSVNVFEDNNVGHHPLMSATALLQKAAQMGATVSSNGGAMMNSRAAEKGFVVTSMAPASFGTSDQHSFMNNHNHYMQMMNGEGEQQEHIYGMNGVDMFNAILDQSKAFSKMMEENNNGVLSSTGGGAINKGSGDVMTLDFLGIGGGGGHANFYGTQHQAVAEKGTRDEVWRNWSTKNNNAAGFESLIN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0191 512 Pfam Zinc-finger double-stranded RNA-binding 87 109 IPR022755 -
Sto8g0191 512 Gene3D Classic Zinc Finger 141 220 - -
Sto8g0191 512 Gene3D Classic Zinc Finger 66 136 - -
Sto8g0191 512 MobiDBLite consensus disorder prediction 49 63 - -
Sto8g0191 512 MobiDBLite consensus disorder prediction 30 48 - -
Sto8g0191 512 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 485 - -
Sto8g0191 512 MobiDBLite consensus disorder prediction 1 71 - -
Sto8g0191 512 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 33 485 - -
Sto8g0191 512 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Sto8g0191 512 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Sto8g0191 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Sto8g0191 512 SMART c2h2final6 163 183 IPR013087 -
Sto8g0191 512 SMART c2h2final6 87 109 IPR013087 -
Sto8g0191 512 SMART c2h2final6 128 158 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0191 Sto-Chr8 1307195 1309919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0191 41 366 IDZ Gene Family AT3G50700 54.545 2.90e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto8g0191 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0191 - - gmx:100785295 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3880 13 40044081 40046814 Sto8g0191 8 1307195 1309919 ECH
Sto8g0191 8 1307195 1309919 Sto8g0191 8 1307195 1309919 ECH