LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g0185	ATGGAGGAGGAGAGAATGCTGCCGATTGCAAATGTAGGTAGAATAATGAAGCAAGTAGTTCCAGGAAGTGGGAAGATCTCGAAAGAGGGAAAACAAGTGATGCAAGAATGTGCAACGGAGTTTATAAGCTTTGTGACAGGAGAGGCATCTCACAAGTGTCACAACGAGAATCGTAAGACTCTCAATGGAGATGACATCTGTTGGGCTCTAACTGCCTTAGGTTTTGATCACTACGCTGACGCCATTTCTAGatctGAGCAGCTTATTGTACAAGATCACAGCAAGCAGGagctttaa	297	0.431	MEEERMLPIANVGRIMKQVVPGSGKISKEGKQVMQECATEFISFVTGEASHKCHNENRKTLNGDDICWALTALGFDHYADAISRSEQLIVQDHSKQEL	98

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g0185	98	PRINTS	CCAAT-binding transcription factor subunit A signature	34	52	-	-
	Sto8g0185	98	PRINTS	CCAAT-binding transcription factor subunit A signature	53	71	-	-
	Sto8g0185	98	PRINTS	CCAAT-binding transcription factor subunit A signature	72	90	-	-
	Sto8g0185	98	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	2	84	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Sto8g0185	98	SUPERFAMILY	Histone-fold	3	84	IPR009072	GO:0046982
	Sto8g0185	98	Gene3D	Histone, subunit A	1	97	IPR009072	GO:0046982
	Sto8g0185	98	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	2	84	-	-
	Sto8g0185	98	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	6	70	IPR003958	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g0185	Sto-Chr8	1240723	1241332	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g0185	2	84	CCAAT-HAP3 Transcription Factor Family	AT1G09030	72.289	3.64e-44	138

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Sto8g0185		CBFD_NFYB_HMF	2.4e-24	CL0012

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g0185	K08065		-	mnt:112095391	143.665

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto8g0185	8	1240723	1241332	Sto8g0185	8	1240723	1241332	ECH