LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g0181	ATGGCAGACTCCCAATGTAATACAAGAATGTTGAGTGTTCGGATTGTCTCCATCGACTACTACATGGCGCCGCCGATCCCAGGCCTGGATATCTGTTACAGCAGCTTCCATGGTGGAAAGGTGAACGAGATTCCTGTTGTAAGAATATATGGTTCTACTCCAGCCGGGCAGAAAACTTGCTTACACATGCATCGGGCTTTGCCCTATTTGTATGTGCCCTGTGCAGATATACCTCTTCAGCCAGACCAAGAAGGAGATGCATACACATATAAGGTATCTGCTTCTCTTGAGAAGGCCTTGAAGCTTAAAGGCAGCATTGGTTCCACAAGACAGCATGTACATGGCTGTAGCCTTGCTGGTGCTGTTTTTGACAAAAGTTTACAGCCCTATGAATCACATATTCCTttcattcttcagtttttgGTTGACTATAACTTATATGGCATGGGTCATCTGCACCTTTCAAAGATGAAGTTCCGCCTACCTATACCAGGTTCTTCACAcaagaaattgaatttgaatagCCAACAGAGAGTGGCAGATCCAGATGGTGATGCATGTTTAGAGTCAATAATTTGGACATCTTCAACGATCTCATCTGATTGGATGTGGCAACCTCAGAGTGAATTGGGTGTTTCATCTAATCATGAGGCGCATTGCCCTAAACGTCAGAGCACATGTGAATTGGAGGGTGATGCTTCTGTAGATGAGATTCTTAATCGCCAGTTTAAAATGTATTCGTCCCTCTCACAAACCCGCTCAGATGTGCAAATGGTTCAATCACTTATACCAATATGGAAGGAACAGCAGGAAAGGACTGGGATATATGAGGCTACTATTCCTCCTGATCCTGGAAAACCACTGCCACAACATGTTCTGAAAAATCTTTCTGCTGGTTTTGACTTTGAGAAAAAATTTCTTGAGTTGTGCAGTGAAGCTGATgcatcttcttcatttttaactCCCTTAGAGAAGGAACTAAGAGAAACAGACATAATAGGCTCAGCATCACCGCCAGCTTCATTATGCAAAGATACCAAATTGCATGAGGAAGGGATTGATGCAAGTCTCAGATCACCGAGAGCTGCAGATAAGGAAGCACTGAATCTCCTAAATTGGTTGGCATCTTCTCAAGCTGCAGAGGACATAACCTCCGATGATGAACTTATTCGTGAAACCATTTTGAGTCCCTTGTTACCTGCTACTACAATTGATAAGGTTCTGGAGAAAGCTAATATGGACTATGAGAGTGAGTCCCAAAAGGAGTGTCAGGATATTCTAGATTCAATAGAAATGGAGTCATCAAAGCAGAAGCTGCCTTTGTCCTCGAATCTTGATGGTCCTATTGCGTCTTTGTCAAACAATATGATTCCCCAAGTTGACGGTTCTGGTGATGATGAGTTTTCAAGTCCATGTGCTAGTTCAGCTGGAATATCATTTGCACTAGACAGAAAGAGTGAAACCAAAGGGTCGTCTGAATACCATGTACTGCAGAATACTAGCACTAGTGCCCTTAGTAAAGACAACAGGGATAAAGTATGGCGATCATTGCCTTCTCCCAAGACCCATAACAATGGTGAGCATGCTAGTGAAAAGGAGTATAAAGGTGCTTGTGACAAAATAGAGGATAAATGTGCTTCTGATGTAAGAGAAGGACATACATTGGTTAATTGCTCTGTGCGGGACTTGATGAGGAGAAAGAGATGCTACCGAGTTGAACAAGCTGACTGTGAGTCTGGAATAATAAAAAAGCTTTTTCTAGACAAGGATGAAAAACATAACACATGCCTTTGGAAACCACAACTGGATTTGAAAacaccgaaaactgatgaagaaaaaAGGGAAGTCCAGAAGAACTGTGATCTCAAAATGAACAATAAGGATATTTTGGCGCGTGGGAAACTTCCCCTTGTAACTGGCAGTGATAGTTTCTTACAGGCAAGCATGCCAGAAGATGAACATTTTGATCAACCTGAAATGGATGGTCTGAGAGCTAAGGCTTTCAGTGACAAAAAGTTTAAGGTTGGCCCAACATATGTACAAACTGCAGCTTCTGATGCTTATACCCAGAGATTTGATCCTTTCTTTGATGTTCAGAAGTTGACAAAAAATGCTGAACATGAAGTCAGGGCTCCTGACAACTGTCAGCAAATTAACTCGGAAGATTTGAGTAGTATACAGAGCTCTTCTGTTGAGAATGTAGTGTCTGGCAATGATTGCATATATAGATGCTCTAATGGTCAGATGACGTCTTACGAGAACTCTGTGGACATGAACACTGCAAGTGGTGTGCAAGTATTGCAATGTGTGATAAATAAGAAGAAACCTGGCGAAAATTTGGAATTTTGTGAGACTATTGGCTCAGTGCCCATTGTTCATGAATTGGTGTGTAATAACATGGTGTCAACTGTGAGTAGGACACCTCCCATGGCAGATGTTCCtgaaaGGAAGATGAAAAGGGCTACGTTGAAGCAGCCACCTGGTTGGAAAGATCTGGAtgattttattccattttctgcTGGGGGTTCCCAGAAGGAGATGGAAACTTGGAAAAATAGAGCTAGAATTGGCGCCCCTATTTCTCAAGGGGAACTGGTTGCGGCTCACTATCAAAATGATGGCACTTACCTATGCATATTGAAACCCAGAATTTTGCCTCCTTCTGTGGCAAGTGTTCAGAGATGGCTATGTTGTGATGAGAGAGATCATATGTTTCAAGAAACTAATGCAAAGGAGAAGAATTTGCCTAAATGCACTACTAGACCTCATCTTATGTCTAAGTTGGACCAAGATGTCGATTCTGAAAGCAAGCCTCCGTGCATGAGTGGAGGACAAATAAATGGAACTAAAAAATGCTTGGATGGCGCACAAGATATTTCTCAAATATCAGGCTCTGATGGGAAATCAAGGTCTACTCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTATTGGCTGTGGACAGCAATTGACATTGCTTAGTTTAGAGGTACCGGAGTTAGAACTTGTTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCGGTTTGATTCCATCAACATTGTAGCTCTTGGTTTTCAAAATGATAGTGACACTATGATTGAAGTTCTTGTCCTTTTGCATAATAAACTTGAACCTTGTCAAAGAAGTTTTGATGCTCTATTAGGCTGCAAGGTGCTGGTTTTCACTGATGAGAAGGAGTtgctaaaagaattaattaagattGTGTCGTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGGGTTCTCTTGGTTATTTAGCAGAAAGAGCTTCACATCTTGGTTTAGGGTTACTTAATAGTTTATCACGTTCTCCGTCTGAGTCTTGGATTGCTTCTGAAGATACTGGAACTTCTGAGAAGGATATATTGGAACCTGCCATTCCTGATATATCTAGTGCAGGTGATTGTGTTCAAGAAACTTCAATAATTGAGGATGAATGGGGACGAACACATGCTAGTGGAGTACATGTTGGTGGAAGAATTGTCCTTAATGTATGGCGGCTGATCCGTGGAGAAGTTAAGCTGAATTTATACTCAGTTGAGGCTGTAGGGGAAGCTGTATTGAGGCGGAAAGTTCCTTCAATTCACTGCAGGGTGTTGACAAAATGGTTTTCTAGTGGTCATGCACGAGCAAGATATCAATGTGTCAAATATATTACTGAGAGAGCAAGGCTGAACCTTGAGATATTAAGCCAACTTGATATGGTAAATCGAACATCAGAGCTTGCTCGTATCTTTGGCATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCGCAATATCGTGTAGAATCCATGTTTCTGAGGCTGGCACATACTCAAAACTATCTTGCTATTTCTCCTGGGAATCAACAGGTTGCTTCTCAACCTGCAATGGAGTGCCTGCCCCTTGTGATGGAACCGGAGTCTGGATTTTATTCAGACCCTGTTGTTGTACTTGATTTTCAGTCTTTATATCCATCCATGATAATTGCATACAACCTTTGCTTTTGTACATGCCTTGGGAAAGTTTTGGCATCGAAGACAAACACGCTTGGGGTTAGTTCATTTTCACCAGAGCAGCATGTTTTGCAGGGTTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTCATGTTTGTTCCTTCCAAGGTTCGTCGAGGTATACTGCCACATTTGTTGGAAGAAATTCTATCAACTAGAATAATGGTGAAAGGAGCAATGAAAAAGTTGGCTCCTTCACAGCATGTTCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTTATATCAAATGTAACATATGGCTACACTGCTGCCGGATTTAGTGGCCGAATGCCATGTGCGGAGCTTGCAGACAGTATTGTACAGTGTGGCCGACGTACACTGGAAAATGCTATATCATTTGTCAATCTACATGAAAAATGGAATGCAAGAGTTATTTATGGAGATACTGATAGCATGTTTGTGCTCCTTAAAGGACGCACTATTAAAGAATGCTTAGAAATTGGGAGTGAGATTGCCTCTGCCGTCACTGCTATGAATCCTAGTCCTGTTACCCTGAAGTTGGAAAAAGTTTATCATCCTTGTTTCCTCCTTACTAAGAAGCGATATGTTGGTTACAGTTACGAAAGTCCCACTCAAATTGAGCCAGTTTTTGATGCTAAAGGCATTGAGACAGTTCGTAGGGACACATGTGGTGCAGTTTCAAAGATCATGGAACAGTCTTTGAGGCTCTATTTTGAGCATCAGGATTTATTGGAGgtgaaaacttatttacaACGGCAGTGGAAGAGAATTCTTTTAGGTAGAGTCTCCCTTAAAGATTTTGTCTTTGCTAAAGAGGTTCGCTTGGGTAGCTACAGTAGAAGGATTTCGTCACTACCTCCAGCTGCAATTGTGGCCATTAAGGCAGCGAAGGTTGATCCTAGAGCAGAACCACGTTATGGTGAGAGAGTACCCTACGTAGTAATCCATGGAGAGCCAGGAGCTCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCGTTCAGAATAAATGACTTGTACTAcattaataaacaaataatacCTGCTCTGCAGCGGGTATTTGGGCTTGTTGGTGCTGACCTGAACCAGTGGTTTTCAGAGATGCCACGGCCTATAAAGGAAGCCTGTGCGAAGTATCCCTTTGCTCCAAATTTACATCGAACAAGAATTGACTTTTACTATCTTTGGAGCAAGAGATGCAACATCTTGTTGCTGTCACTATCGAATCAATGTAATTCAAAGGCATTGGCAAGACAGAAGTCCGCCTCAATCAAGATATACCTATGCatagaTGAAGGATTAATGGCTCCTACAAAGAATTCTAGAACTGCAAATATGCGTCTGCATATTTGTTCTTTGTTCTTCATATTAGGCACTTTACAGGGACAGCTTCTAATAACAGATTTTGGTGTGAAAAATATTATTATAGCCTACCCcttCGATAGCGAAAGGGAGATTATTAAAACTAAAACATTGGCATTAACTGAGGCTGCACAACGAGGAGtttacattttCTGTATAGTTACTTCTAAGTTATTTGTGCTCTGA	5616	0.4065	MADSQCNTRMLSVRIVSIDYYMAPPIPGLDICYSSFHGGKVNEIPVVRIYGSTPAGQKTCLHMHRALPYLYVPCADIPLQPDQEGDAYTYKVSASLEKALKLKGSIGSTRQHVHGCSLAGAVFDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSKMKFRLPIPGSSHKKLNLNSQQRVADPDGDACLESIIWTSSTISSDWMWQPQSELGVSSNHEAHCPKRQSTCELEGDASVDEILNRQFKMYSSLSQTRSDVQMVQSLIPIWKEQQERTGIYEATIPPDPGKPLPQHVLKNLSAGFDFEKKFLELCSEADASSSFLTPLEKELRETDIIGSASPPASLCKDTKLHEEGIDASLRSPRAADKEALNLLNWLASSQAAEDITSDDELIRETILSPLLPATTIDKVLEKANMDYESESQKECQDILDSIEMESSKQKLPLSSNLDGPIASLSNNMIPQVDGSGDDEFSSPCASSAGISFALDRKSETKGSSEYHVLQNTSTSALSKDNRDKVWRSLPSPKTHNNGEHASEKEYKGACDKIEDKCASDVREGHTLVNCSVRDLMRRKRCYRVEQADCESGIIKKLFLDKDEKHNTCLWKPQLDLKTPKTDEEKREVQKNCDLKMNNKDILARGKLPLVTGSDSFLQASMPEDEHFDQPEMDGLRAKAFSDKKFKVGPTYVQTAASDAYTQRFDPFFDVQKLTKNAEHEVRAPDNCQQINSEDLSSIQSSSVENVVSGNDCIYRCSNGQMTSYENSVDMNTASGVQVLQCVINKKKPGENLEFCETIGSVPIVHELVCNNMVSTVSRTPPMADVPERKMKRATLKQPPGWKDLDDFIPFSAGGSQKEMETWKNRARIGAPISQGELVAAHYQNDGTYLCILKPRILPPSVASVQRWLCCDERDHMFQETNAKEKNLPKCTTRPHLMSKLDQDVDSESKPPCMSGGQINGTKKCLDGAQDISQISGSDGKSRSTPLSQIGFRDPASIGCGQQLTLLSLEVPELELVLAESRGDLLPDPRFDSINIVALGFQNDSDTMIEVLVLLHNKLEPCQRSFDALLGCKVLVFTDEKELLKELIKIVSSSDPDILMGWDIQGGSLGYLAERASHLGLGLLNSLSRSPSESWIASEDTGTSEKDILEPAIPDISSAGDCVQETSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVGEAVLRRKVPSIHCRVLTKWFSSGHARARYQCVKYITERARLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVLASKTNTLGVSSFSPEQHVLQGLKDQILLTPNGVMFVPSKVRRGILPHLLEEILSTRIMVKGAMKKLAPSQHVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRRTLENAISFVNLHEKWNARVIYGDTDSMFVLLKGRTIKECLEIGSEIASAVTAMNPSPVTLKLEKVYHPCFLLTKKRYVGYSYESPTQIEPVFDAKGIETVRRDTCGAVSKIMEQSLRLYFEHQDLLEVKTYLQRQWKRILLGRVSLKDFVFAKEVRLGSYSRRISSLPPAAIVAIKAAKVDPRAEPRYGERVPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFSEMPRPIKEACAKYPFAPNLHRTRIDFYYLWSKRCNILLLSLSNQCNSKALARQKSASIKIYLCIDEGLMAPTKNSRTANMRLHICSLFFILGTLQGQLLITDFGVKNIIIAYPFDSEREIIKTKTLALTEAAQRGVYIFCIVTSKLFVL	1871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g0181	1871	Gene3D	Helix hairpin bin	1388	1448	-	-
	Sto8g0181	1871	PANTHER	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	8	1758	IPR030559	GO:0006281\|GO:0016035\|GO:0019985
	Sto8g0181	1871	SMART	polmehr3	1014	1501	IPR006172	GO:0000166\|GO:0003676\|GO:0003887
	Sto8g0181	1871	Gene3D	-	1024	1305	IPR036397	GO:0003676
	Sto8g0181	1871	SUPERFAMILY	DNA/RNA polymerases	1309	1723	IPR043502	-
	Sto8g0181	1871	Gene3D	-	1564	1729	IPR042087	-
	Sto8g0181	1871	CDD	DNA_polB_zeta_exo	988	1244	-	-
	Sto8g0181	1871	Gene3D	DNA Polymerase, chain B, domain 1	29	120	-	-
	Sto8g0181	1871	MobiDBLite	consensus disorder prediction	500	533	-	-
	Sto8g0181	1871	Pfam	DNA polymerase family B, exonuclease domain	1057	1131	IPR006133	-
	Sto8g0181	1871	PRINTS	DNA-directed DNA-polymerase family B signature	1322	1335	IPR006172	GO:0000166\|GO:0003676\|GO:0003887
	Sto8g0181	1871	PRINTS	DNA-directed DNA-polymerase family B signature	1431	1443	IPR006172	GO:0000166\|GO:0003676\|GO:0003887
	Sto8g0181	1871	PRINTS	DNA-directed DNA-polymerase family B signature	1487	1495	IPR006172	GO:0000166\|GO:0003676\|GO:0003887
	Sto8g0181	1871	Gene3D	DNA Polymerase, chain B, domain 1	121	160	-	-
	Sto8g0181	1871	SUPERFAMILY	Ribonuclease H-like	27	1268	IPR012337	-
	Sto8g0181	1871	Pfam	DNA polymerase family B	1263	1710	IPR006134	GO:0000166\|GO:0003677
	Sto8g0181	1871	ProSitePatterns	DNA polymerase family B signature.	1489	1497	IPR017964	GO:0000166\|GO:0003676
	Sto8g0181	1871	CDD	POLBc_zeta	1270	1718	-	-
	Sto8g0181	1871	Gene3D	Palm domain of DNA polymerase	1308	1553	IPR023211	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g0181	Sto-Chr8	1195410	1216366	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g0181	1029	1710	Core DNA Replication Machinery Family	AT5G63960	29.916	3.44e-79	284

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g0181	K02350		-	gmx:100777934	2331.98

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto8g0181	8	1195410	1216366	Sto8g0181	8	1195410	1216366	ECH