Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0167 ATGGATCACCAAGGGCACGGCCAGAACCCTTCTATGGGGGTTGTTGGTAGTGGAGCTCAGTTACCTTATGGTTCTAATCCATACCAGCCAAACCAAATGACCGGCCCACCCACTTCCGTTGTTACATCAGTTGGGGCGGTTCAATCTACTGGTCAGCCTGCTGGAGCTCAGATGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAGCAGCAGCAACTTCAGCAACAACTCCAATCCTTTTGGGCTAATCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCATAGTCTTCCCTTGGCCAGGATCAAGAAGATTATGAAAGCAGATGAGGATGTGAGGATGATTTCAGCTGAGGCACCTGTTATATTTGCAAGGGCATGTGAAATGTTCATATTAGAATTAACCTTGCGCTCTTGGAACCACACTGAAGAAAACAAAAGGAGAACACTCCAGAAAAATGATATTGCAGCAGCAATTACAAGGACTGACATCTTTGATTTCTTGGTTGATATTGTGCCCCGGGAGGACTTGAAAGATGAAGTACTTGCATCAATCCCTAGAGGAACAATGCCGGTTGCAGGGCCTGCTGATGGACTTCCTTACTGCTATATGCCGCCACAGCATGCTCCTCAAGTAGGCGCTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCGTCTATATATGCTCAACAATCTCATCCCTACATGGCACAGCAAATGTGGCCACAGCCACCGGAGCAACAACAATCACCTCCAGATCATTAA 783 0.4636 MDHQGHGQNPSMGVVGSGAQLPYGSNPYQPNQMTGPPTSVVTSVGAVQSTGQPAGAQMGQHQLAYQHIHQQQQQQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADGLPYCYMPPQHAPQVGAAGVIMGKPVMDPSIYAQQSHPYMAQQMWPQPPEQQQSPPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0167 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
Sto8g0167 260 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Sto8g0167 260 MobiDBLite consensus disorder prediction 22 39 - -
Sto8g0167 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Sto8g0167 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Sto8g0167 260 SUPERFAMILY Histone-fold 72 173 IPR009072 GO:0046982
Sto8g0167 260 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0167 Sto-Chr8 1116318 1117100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0167 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.903 6.17e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto8g0167 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0167 K08066 - gmx:100527803 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3908 13 40197930 40198709 Sto8g0167 8 1116318 1117100 ECH
Sto8g0167 8 1116318 1117100 Sto8g0167 8 1116318 1117100 ECH