Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0163 ATGGACGAATGTGGGCCGTACACGTGGTACGTTGATGATGAACTGCACCCTACATGCCACAGTACACGTAGGCATGGAGGAATGAAAAACAACGGCTACTTCCAAAACCGCCATCCCAAAGCACAAGCGATGATCAACCAAAATTCTTCCCCTTCTCTTCTCTGCTTCCTCCTCCCCCTCCTCCTCTCTCCTTCCCTCGTCGCACCCCAATCTCCCAATGGCCAATCCGATCAGGTTACCTACAACAGCTTCACCCCTTCCATGGCCATCATCATCGTCATTCTCATCGCTGCTCTTTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCCGATTCCCCCTCCGGCAGCGTTCGTCCCCTCGGTCTCGGCGCCGCACGTTCCCGACGCGCCGCCCGTGGCCTTGACCCCTCCCTCATCAACACCTTCCCCACTCTCCAATACTCTGAGGTTAAGGTTCACAAGATTGGGAAAGGCGCACTCGAATGCGCCGTCTGCTTGTGCGAATTCGAGGACTCCGAAACGCTGCGTTTGATCCCCAAGTGCGACCATGTCTTCCACCCTGACTGTATCGATGAGTGGTTGGCTTCCCATACTACTTGCCCTGTTTGCCGAGCCAACCTTGTTCCCCAACCTGATGAATCCGCCCATGCTCTTCCAACCTTCAATCCCCAATCTGATATTGAACCTCAAAACGACGCCGTTCAACCCGAACCCGAGCAACAACAACGCGGCGCTACTGTTGACCCCATACCGCCTGAGCCTGAAGTTCTATCCCTCAATCAGACCATGAAGCGGAACCGTACGCGGGGTTCTCGATCGGGCCGCCCACGACGGTTTCCCCGGTCACACTCCACTGGCCATTCATTGGTCCAACCCGGTGAAAACACAGAACGGTTCACTCTGAGATTGCCGACGGAAGTCAGGAACCAGATCTTGAACCGGGAATTGCATCGGGCAACAAGTATGGTGGTCTTGCCCAGAGAAGGTAGTTCAAGGCGGGGATATCGAACGGGTGGTGCTGATGGTAGTATCAGAGGGAGGTTTTCAAGGCGGCTGGATAGGTGGACTAAATCGGACCGGTGGGTTTTCACGATGGCGCCGCCATTCTTAGTGAGGGCGTCGTCGGTTAGGTCCCTAAGGTTGGGCGGTACCGCCGGTGAAGGTACCTCTGGTCAACCCATGCCAGCGCCGGCCGATGCGGCCCGGCTTCCGGTTTAG 1227 0.5632 MDECGPYTWYVDDELHPTCHSTRRHGGMKNNGYFQNRHPKAQAMINQNSSPSLLCFLLPLLLSPSLVAPQSPNGQSDQVTYNSFTPSMAIIIVILIAALFLMGFFSIYIRHCADSPSGSVRPLGLGAARSRRAARGLDPSLINTFPTLQYSEVKVHKIGKGALECAVCLCEFEDSETLRLIPKCDHVFHPDCIDEWLASHTTCPVCRANLVPQPDESAHALPTFNPQSDIEPQNDAVQPEPEQQQRGATVDPIPPEPEVLSLNQTMKRNRTRGSRSGRPRRFPRSHSTGHSLVQPGENTERFTLRLPTEVRNQILNRELHRATSMVVLPREGSSRRGYRTGGADGSIRGRFSRRLDRWTKSDRWVFTMAPPFLVRASSVRSLRLGGTAGEGTSGQPMPAPADAARLPV 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0163 408 MobiDBLite consensus disorder prediction 385 408 - -
Sto8g0163 408 MobiDBLite consensus disorder prediction 217 302 - -
Sto8g0163 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 213 IPR013083 -
Sto8g0163 408 SMART ring_2 165 206 IPR001841 -
Sto8g0163 408 MobiDBLite consensus disorder prediction 220 245 - -
Sto8g0163 408 MobiDBLite consensus disorder prediction 271 285 - -
Sto8g0163 408 MobiDBLite consensus disorder prediction 326 346 - -
Sto8g0163 408 Pfam Ring finger domain 164 207 IPR001841 -
Sto8g0163 408 CDD RING-H2_EL5_like 164 207 - -
Sto8g0163 408 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 54 351 - -
Sto8g0163 408 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Sto8g0163 408 PANTHER RING FINGER DOMAIN-CONTAINING 54 351 - -
Sto8g0163 408 SUPERFAMILY RING/U-box 164 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0163 Sto-Chr8 1077073 1089212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0163 54 405 Rapid Response to Elicitors AT3G05200 48.189 1.63e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0163 K10664 - gmx:100810865 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0163 8 1077073 1089212 Sto8g0163 8 1077073 1089212 ECH