Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0109 ATGACAAGCGTGAAGGAGGCAGAGCGAGACAAGTACAGCATGATCAATTTCGAAGAAACTGAGCTTCGACTGGGCTTGCCTGGTGCTGCCAGCGACGCCGACGCTGCAATTAAGAACACTAGTGCTGCCAAGAGAGTCTTCTCCGACACCACTAGTGTGGATTTGAAGCTCAATCTTTCTTCCTCCAATAATAACCACAATTCTCCACACAACACTTCTTCTGCTCCTGCTCCTCCCCCTAACGACCCTGCAAAGCCACCCGCTAAGGCGCAAGTAGTGGGTTGGCCACCAGTTCGATCGTTCCGAAAGAACATCGTGACCGTTCAAAAGAACAGCAAGGAGGAAGTTAACGGCGCAACGTTTGTGAAGGTGAGCATGGACGGTGCACCGTATCTACGGAAAGTGGACTTGAAGATGTACAAGAGCTACCAAGAACTGTCAGATGCACTTGGTAAGATGTTCAGCTCCTTCACCGTTGGGAATTACGGCTCACAAGGGTGCATGAAAGACTTCATGAACGAGAGCAAATTGATAGATCTCTTGAATGGATCTGACTATGTCCCAACTTACGAGGACAAAGACGGAGACTGGATGCTTGTGGGTGACGTTCCCTGGGATATGTTCGTGGGATCATGCAAGCGCCTCCGCATAATGAAAGGATCTGAGGCAATTGGGCTGGCGCCAAGAGCGGTGGAAAAGTGCAGGAACAGAAGCTGA 717 0.5021 MTSVKEAERDKYSMINFEETELRLGLPGAASDADAAIKNTSAAKRVFSDTTSVDLKLNLSSSNNNHNSPHNTSSAPAPPPNDPAKPPAKAQVVGWPPVRSFRKNIVTVQKNSKEEVNGATFVKVSMDGAPYLRKVDLKMYKSYQELSDALGKMFSSFTVGNYGSQGCMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVGSCKRLRIMKGSEAIGLAPRAVEKCRNRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0109 238 Pfam AUX/IAA family 19 229 IPR033389 -
Sto8g0109 238 Gene3D - 113 232 - -
Sto8g0109 238 MobiDBLite consensus disorder prediction 57 93 - -
Sto8g0109 238 ProSiteProfiles PB1 domain profile. 119 220 IPR000270 GO:0005515
Sto8g0109 238 SUPERFAMILY CAD & PB1 domains 111 219 - -
Sto8g0109 238 MobiDBLite consensus disorder prediction 57 72 - -
Sto8g0109 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 231 IPR003311 GO:0005634|GO:0006355
Sto8g0109 238 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0109 Sto-Chr8 754589 756609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0109 72 223 B3 DNA Binding Superfamily AT3G61830 31.013 2.82e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Sto8g0109 AUX_IAA 2.7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0109 K14484 - qsu:112037338 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3980 13 40675660 40676424 Sto8g0109 8 754589 756609 ECH
Sto8g0109 8 754589 756609 Sto8g0109 8 754589 756609 ECH