LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g0088	ATGCACTCTCACTTTCTCTTCTTCTACTGTTACATCGGTCTCTCTCTTGTTTTTGCTACTGATGAAGTTTCAACTCTTGTCTCAATCAAATCCAGTCTCGTTGATCCAATCAACTTTCTCAAGGATTGGCAAGCACCATACAATGCTTCATCACCCCATTGTAACTGGACTGGAGTTGGCTGCAACACTAGAGGCTTCGTCGACAGACTCGACCTCTCCAACATGAACCTTAGTGGTCGTGTTTCAGAACACATTCAAGCACTTTCAAGTCTCTCCTATTTTAACATAAGTTGTAACAATTTTGCTTCTTCATTGCCAAAATCACTGTCCAATCTCACCTCCTTGAAGAGCTTTGATGTCAGCCAGAACTACTTCACTGGAGGCTTTCCTATTGGTCTTGGAGGAGCCATAGGATTGAGATCAATCAATGCTTCAAGTAATGATTTCTTGGGTTTTCTTCCTGAGGATCTTGGAAATGCAACATCTCTAGAAAGCCTTGATTTTCGAGGGAGCTACTTCCATGGTTCAATCCCAAGGAGTTTCAGGAATTTGCAGAAGCTGAAATTTCTTGGGCTTTCAGGGAATAACTTTACAGGGAAGATTCCAGGAGAGGTTGGACAACTTGCTTCTCTAGAGACATTGATTCTTGGGTACAATGAGTTTGAAGGTGAGATCCCTTCAGAGTTTGGCAATCTCACAAATCTTGAGTACCTAGATTTGGCTGTGGGTAATCTGAGTGGACAGATTCCACCAGAATTGGGTAAGTTGAAAAAGCTCACTACAATTTACTTGTACAAGAACAAGTTCCAAGGTAAGATTCCTTCTGAGATTGGCAACATTACATCACTGGCATTTCTGGACCTATCAGACAATGAGATTTCAGGGGAGATTCCAGAGGAAGTAGCTGAACTGAAGAACTTGCAGCTACTAAATGTGATGAGTAATAAACTTACTGGTTTTGTGCCAGAAAAGATTGGTGAGTTGAAGAATTTGCAGGTGCTTGAGCTATGGAAAAATTCTTTACAAGGTCCTTTGCCTGTGAACCTTGGACAGAACTCTCCATTGCAGTGGCTAGATGTTTCTTCTAACTCATTATCAGGTGAGATTCCTCCAGGTTTGTGTGCTTCTGGAAATCTCACTAAACTCATTCTTTTCAATAATTCCTTCTCTGGTTCCATCCCAAGTGGGATTTCCAACTGTTTGTCTTTGGCACGTGTTCGCATTCAGAACAATCTCATATCTGGGACCATTCCAGTTGGTTTTGGAAACCTCCCAGGACTTCAAAGGCTGGAATTGGCAAAGAATAACCTTAGTGGCCAAATTCCTATAGATATTACTTCATCCACTTCACTTTCTTTCATTGATGTGTCTTGGAACCATCTTGAATCTTCTCTACCTTCTGGTATTCTTTCTATTCCCACCCTTCAAACTTTCATTGCCTCTAATAACATCCTGGGAGGCAATATTCCAGATGAGTTCCAAGACTGTTTGTCTCTCTCTGTGCTGGATCTTTCAGACAACCTTATATCTGGCGAAATCCCAGAAAGCATTGCTTCTTGTCAAAAACTAGTCAATCTGAACCTCGGAAACAACCGCTTAACCGGGAAAATCCCGAAATCAATCACCAACATGCCCACCTTAGCCATTATTGATCTGTCCAACAATTCACTTTCTGGTCGGATACCTGAAAACTTTGGCATCTCCCCAGCTCTTGAAACGCTCAATCTCTCCTACAACAAGCTTGAAGGGCCAGTACCCTCAAATGGCATTCTGATGACCATAAATCCGAATGATCTCATCGGCAATGCCGGTCTCTGCGGAGGCATTCTTCCTCCATGCTCTCAGAGCCTTGCTATGACAAGCCAGAAAAAGAGCTCACACATGAAGCACATTATAATTGGCTTCATCACGGGCATATCAGTGATTTTATCTCTTGGCATAGCATATCTAGGTGGTAGATGGTTATACAATCAATGGTACATGTACAACAGTTTCATCCATGATTGGTTCAAAAGCAGCAATGAAGAATGGCCTTGGAGGTTAGTAGCATTCCAAAGGATCAGTTTCACCAGCAGTGACATCCTAGCTAGCATTAAGGAATCAAACATCATAGGCATGGGAGGGACAGGTATTGTGTACAAAGCCGAAGTTCATAGACCTCAAGTGACAGTGGCAGTGAAGAAGCTATGGAGGTCATCAGGAACAGACATGGAAAATGGAAATGATGTGTTGAAAGAAGTGAACCTGCTAGGGAGATTGAGGCATAGGAATATAGTGAGGCTATTAGGGTATGTTCACAATGAGAGGGATGTGATGATGGTGTATGAGTATATGCCTAATGGGAATCTTGGGACAGCTCTACATGGTGAACAAGGTGAGAGGTTACTGGTAGATTGGGTTTCAAGGTATAATATAGCTGTGGGAGTTGCACAAGGCCTCAATTACCTTCACCATGATTGTCACCCACCAGTGATTCATAGGGATATCAAGTCTAACAACATACTGCTTGACGCAAATTTGGAGGCAAGGATAGCAGATTTTGGGTTAGCCAGGATGATGATCCACAAGAATGAGACGGTTTCAATGGTGGCTGGATCTTACGGCTATATCGCACCAGAATATGGGTACACTCTGAAGGTGGACGAGAAAATTGACATATACAGTTATGGGGTGGTGCTACTGGAGCTGCTAACTGGAAAAAAGCCATTGGAGCAATCATTTGAAGAGTGTGTGGACATAGTTGAATGGGTGCGAAAGAAGAGAAGCAACAGAGCGTTGGAGGAAGCAATAGACCCCACCATAGCTGGTAAGTGCAAACATGTGCAAGAAGAGATGCTTCTTGTTCTCCGGATTGCACTTCTTTGTACAGCAAAGCTTCCAAAGGAAAGACCATCCATGAGAGATATACTCACAATGCTTGGAGAAGCAAAACCCAGAAGGAAAAGCATTTGTCAAAATGGAGGAAATGATGATGCTGGTAGCAAGGAAAAGCCAATCTTTACCAACTCCCCCATAGTAAGCCTCCTCTAG	3030	0.4281	MHSHFLFFYCYIGLSLVFATDEVSTLVSIKSSLVDPINFLKDWQAPYNASSPHCNWTGVGCNTRGFVDRLDLSNMNLSGRVSEHIQALSSLSYFNISCNNFASSLPKSLSNLTSLKSFDVSQNYFTGGFPIGLGGAIGLRSINASSNDFLGFLPEDLGNATSLESLDFRGSYFHGSIPRSFRNLQKLKFLGLSGNNFTGKIPGEVGQLASLETLILGYNEFEGEIPSEFGNLTNLEYLDLAVGNLSGQIPPELGKLKKLTTIYLYKNKFQGKIPSEIGNITSLAFLDLSDNEISGEIPEEVAELKNLQLLNVMSNKLTGFVPEKIGELKNLQVLELWKNSLQGPLPVNLGQNSPLQWLDVSSNSLSGEIPPGLCASGNLTKLILFNNSFSGSIPSGISNCLSLARVRIQNNLISGTIPVGFGNLPGLQRLELAKNNLSGQIPIDITSSTSLSFIDVSWNHLESSLPSGILSIPTLQTFIASNNILGGNIPDEFQDCLSLSVLDLSDNLISGEIPESIASCQKLVNLNLGNNRLTGKIPKSITNMPTLAIIDLSNNSLSGRIPENFGISPALETLNLSYNKLEGPVPSNGILMTINPNDLIGNAGLCGGILPPCSQSLAMTSQKKSSHMKHIIIGFITGISVILSLGIAYLGGRWLYNQWYMYNSFIHDWFKSSNEEWPWRLVAFQRISFTSSDILASIKESNIIGMGGTGIVYKAEVHRPQVTVAVKKLWRSSGTDMENGNDVLKEVNLLGRLRHRNIVRLLGYVHNERDVMMVYEYMPNGNLGTALHGEQGERLLVDWVSRYNIAVGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMIHKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLEQSFEECVDIVEWVRKKRSNRALEEAIDPTIAGKCKHVQEEMLLVLRIALLCTAKLPKERPSMRDILTMLGEAKPRRKSICQNGGNDDAGSKEKPIFTNSPIVSLL	1009

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g0088	1009	PANTHER	UNNAMED PRODUCT	16	990	-	-
	Sto8g0088	1009	Pfam	Protein kinase domain	700	970	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto8g0088	1009	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1	16	990	-	-
	Sto8g0088	1009	SUPERFAMILY	L domain-like	43	345	-	-
	Sto8g0088	1009	Gene3D	Transferase(Phosphotransferase) domain 1	782	994	-	-
	Sto8g0088	1009	ProSitePatterns	Protein kinases ATP-binding region signature.	704	728	IPR017441	GO:0005524
	Sto8g0088	1009	SMART	serkin_6	698	973	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto8g0088	1009	Gene3D	Ribonuclease Inhibitor	306	617	IPR032675	-
	Sto8g0088	1009	Pfam	Leucine rich repeat	403	461	IPR001611	GO:0005515
	Sto8g0088	1009	Pfam	Leucine rich repeat	522	581	IPR001611	GO:0005515
	Sto8g0088	1009	Gene3D	Phosphorylase Kinase; domain 1	697	781	-	-
	Sto8g0088	1009	Pfam	Leucine rich repeat N-terminal domain	20	62	IPR013210	-
	Sto8g0088	1009	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	824	836	IPR008271	GO:0004672\|GO:0006468
	Sto8g0088	1009	Gene3D	Ribonuclease Inhibitor	19	245	IPR032675	-
	Sto8g0088	1009	SUPERFAMILY	RNI-like	245	589	-	-
	Sto8g0088	1009	Gene3D	Ribonuclease Inhibitor	246	305	IPR032675	-
	Sto8g0088	1009	SUPERFAMILY	Protein kinase-like (PK-like)	691	973	IPR011009	-
	Sto8g0088	1009	ProSiteProfiles	Protein kinase domain profile.	698	980	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g0088	Sto-Chr8	625251	628377	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g0088	4	1009	Receptor kinase-like Gene Family	AT1G08590	64.569	0.0	1315

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Sto8g0088		Pkinase	1.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g0088	-		-	gmx:100793873	1651.34