Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0085 ATGGACTGCCTGCAATCTATTGATAACATTTCTCCTCCCCAAACCGATGCAGGGAATGACTTCTTAGCTTGGAAGCACACTCATGATGGAGTGTTTACCATTAAATCTGCTTATACTAGTATTTGTCATAATAGTCAGGATAATCTCTGTAAAATTTGGAAAAGACTTTGGAAATGTGAGTGCCCTGAGAAGGTGAGATACTTCCTTTGGAAGATCAGCCATGACTGTATCATGACTGAAGTTCAAAGGAAGAAGAGGGGAATTTCTAGTTTTGATGTCTGTAAGAGGTGTGGGCTTGCTGCGGAGTCAACCACTCATGCAGTTAGAGATTGTGTGTGGGTTAGAGGTATTTGGGAAAAACTTGTCAAAAGGGATAAGATTTATACTGAGATCCACAACTACAAGGAGGCTGCCAGGATGGATAGAAGAGTGAACTCTCTTCAGAACCCGAGTGCAGGGAACCCTATGGCTTGGCAACCTCCTGATaaaggatggtacaaaatcaaCTGTGATGGTTCCTACTGGTGCAATTCGGATGACATAAGTTGCGGTGGTGTTATTCGTAATTCTCATGGCGACTGGATCACTGGTTTTGCCAAGAAGCTTGGTAAGGGAACAGTGTTTCAAGCTGAGCTTTGGGGAGCTCTGATAGGGCTCCAGACTGCGTGGGACCTCCATTTACCTAGAGTCATTCTTGAAACTGACTCAACTTTGGTTTACAATTTCATCACTAAGGGTTGCAGTGATTCTAGTCCTGTTGTTAATATGGCGAAGAGTTTTAAGGATCTTCTTGCTAAAGATTGGATGGTTCGTATCAAGCATGTGCACAGGGATAGCAATCATTTGGCTGATATTTTGGCAACCTCTGCTCATTTTAATAGCTTTGGCCTTGTTTCCTTCGATAGAGTTCCTGATGTTTGTAAAGCTACTTTCTTGGATGACCAGAATAGGGTGTTAGCTATTTTTAGGCTTGACAGGTTACTTCTTTCTAACTCTTTGCACAAACCTAAATGTCCAGAACTCACTACCAGTAATCCATCCGTTTCGGATTTTGCTTCAGCAATCAAGATGGAGGGGAAAACTGAGGAAGTGGAAGATATAGGGAGTGCTTCTAGTGGTTCATTCATTGATGATTCAGATGATGGGTCCTTGACTTCTGAACTAGATGACAAAGTGCATCTCGAGGAACCTTTGACTGAGGAAGAAATAGAAGATCTAATTGCCGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGATGAGTCTCTTGCCAAAGTGGAGATTGAGGTTAGAAGAGAGTTGGAACAGACTCTACAAGGGGATGATTTGGAAACTGCTGTTGCAAATGAGATGACTACATTAAGAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACTGAAAGTGCCTATTTGCTGGAACAACTTGATATTTCTGGCATTGAGCTTCCTAGCCTTTTTAAGTGGATTGAAAGAGAAGCTCCTAATGGTTGTTGCACTGAAGCTTGGAAAAAGAGGAATCTTTGGGTAGGCTCTCAGGCAACTGATGAACTTGCTGAGTCCGTAGCCAATGCTGAGAAATATCTACAAGCGCACAGACCTGTTAGAAGGCGACATGGTAAATTATTGGAAGAGGGTGCCAGTGGGTTTCTCGAAAAAAAACTTTGCAATGAAACCAGCGATCCTGTCAAGGAAAAAGCTGAGGTGGATTGGGAACTGTTTAACAAAATGTTTCATGATGGGGGTGATGCTGATGCTTCATTTGGCAGTAAGAATTGGGCTTCTGTTTATTTGGCTAGCACACCACAGCAAGCTGCACTGATGGGACTCGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTACCGATCCATTCATTGCAGCTGCAATTGCATATGAAAAAGAACTAGAACTTTCTGATgaacaaaagagaaaatttaaaaaggttaaagaagaagatgatgcaaTTGTTGATCAGAAGTTTCAAATCCATTTGAAACGAAGGAGGTATCGAAAGAATAAAAAGCagCGAGAAATGTGCTCAGCCAACCCAGTGATGGAGAGCCTCAAACAGAAGTCCTCAAACTTTAGTATGGAGGGAGCTTGTGATGATGGAAAAATTGTTTCTAACGAAGACATGGAAGTTGGAGATAATATGAATACAGATAACATTGAAGGTCTTGGTAGCAGTTATAATCTTGACAACGAGAAGCCTATGAATGTTGATCCTTTGTCAGAGCACTCTAAATTATCATCGCCTGATGGTGAACACAGAGGTACCAAGCGACTAAATGATGGTGAAGTAGATACTGATACTAAAAAGTGTCGGACTATTACCATTGAAAGTGATGACGAAGCTGAGGCAGTTGAAAATATTGAAGGTCTTTGTTGCACGGTTTGTGATAAAGTGGCTCTTAAAGTTTACTGTCACCCTCTTTTGAAAGTGATTATTTGTGGAGATTGCAATTCTTTAATGGAAGAAAAGATACGCTTTAAGGATCTGAATCCTGATTGTTCAGAGTGTATCTGTGCATGGTGCGGAGGAAGCAGTGAGTTAGTCAGCTGTAAGTCATGCAAAACGTTATTCTGCAACAACTGTATAAAGAAGAATCTTGGTGCAGAATTCCTTTCTGAAGTTCAGGCCACTGGCTGGCATTGTTGTTGCTGCCGCCCAAATCTCTTGCAAGAACTGTCATCACAATTAGAGAAAGCTATGGAATCTTCTGATACATCAGATTCCAGCTCTGGTAGTGATTCAGATAGTTCACATTCAGAGATTAATGTTACAATCAGTTCTAAGCGAAAACGCAAAAAGAAGATTCGGAGGATCCTTGATGATGCTGAATTAGGAGaagaaaccaaaaagaaaattgcaattgaaaagGAACGTCAGGAACGTTTGGCGTCTCTGCGAGTACAGTTTTCTGCCTTGTCTAACATCAAGAGCTCTTCTGGCTATAATGGAAATTTATCTGAAGGTGCCAGTATTGAAGTCCTTGGTGATGCACTAACAGGTTACGTGGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTCCGAATTCCTCCTAGTATCTCAGCTAAACTGAAAGTTCATCAGGTTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGCTGTATTCTGGCTCATACAATGGGACTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAAGTATTGATCTGGggttaagaactgcacttataGTCACACCTGTCAATGTGCTGCACAATTGGCGGCAGGAGTTCCTCAAATGGAGACCAACAGAATTAAAGCCACTCAGGGTTTTCATGCTGGAAGATGTGTCAAGGGATAGGAGAGCAGAACTGCTAGCAAAGTGGAGGGCTAAAGGTGGCATCTTTCTGATTGGCTATACTGCATTTCGAAATTTGTCTTTTGGAAAGCATGTGAAAGATCGACATGTAGCCCGAGAAATTTGTCATGCTTTGCAGGATGGACCAGACATACTTGTTTGTGATGAAGCCCATATGATAAAGAACATAAAGGCTGATATAACCCAAGCCTTGAAACAAGTTAAGTGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAGCATACTAATTCAACTCTGAATGATGTGAAGATTATGAATCAAAGGTCTCACATCCTGTATGAACAGTTAAAAGGCTTCGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATTTGCCACCAAAAACTGTCTTTGTGATAACTGTCAAGCTTTCTCCCTTACAGAGAAAACTGTACAAGAGATTCCTTGATGTGCATGGATTCACTAATGACAGGGCTTCTAATGAAACAATGAGAAAGAGAAGTTTTTTTGCCGGGTACCAGGCATTAGCTCAGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGATAAGGACTATGAGAGACAAGAAGATGCTGTTGAGAATTTTCTTGTGGATGACAGCTCCAGTGACGAAAATTCTGATTATAATGTGGTTGTTGGAGAGAAGATGAGATGTGCAAATGAATTCCTGCAAGGGAAAGTTGGGAATGGCTATTTTCTAAAGGGTTGGTGGAACGATCTTCTTcatgagaaaaattataaagaacTTGATTACAGTGGCAAAATGGTTTTGCTCCTAGACATACTAACCTCGAGTTCTGATGTGGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCGACACTGGACCTCATAGAACTTTATCTGTCAAGGTTATCTCGACGAGGAAAACATGGCAAATTTTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGCTTGTTGAGAGGTTTAATGAGCCTCTCAATAAAAGAGTGAAGTGCACACTTATTTCAACGCGGGCTGGCTCTCTGGGTATTAATCTTCATGCAGCTAATCGCGTTGTTATAGTTGACGGGTCTTGGAATCCCACTTATGATCTTCAAGCTATCTATCGAGCTTGGAGGTATGGCCAAACAAAGCCCGTGTTTGCATACCGATTGCTGGCTCATGGAACTATggaagagaaaatatataagcGCCAGGTGACAAAGGAGGGACTTGCTGCTAGAGTGGTTGATAGACAGCAAGTCTATAGAACAATGTCAAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGAAGAGAATCCTGAGACGTTGGCTGAATTGAGCCAAGAAAATGGGCATACTCGTGGGCATTCACTGAAACATACAGTACCGCATTCAAATGGAACCAGCAATTCTGATAAGTTAATGGAGAGCTTGCTTAGCAAGCATTATCCGAAGTGGATTGCAAATTATCATGAACATGAAACCTTGTTGCAAgagaatgaagaagaaaagctaTCAAAAGAGGAGCAAGACATGGCTTGGGAAGTATACCGGAAGACTTTAGAATGGGAGGAAGTGCATAGAGTACCACTTGGCGAGTCTCTGCCTGATCAAAAACCACGAGTGCCAAATGCAGCACCCCCAGTATCAGAGGCCCACAGCCTCTCACCAACTAAGTTGAGAAATCGTTTTGCGATTCGGAAATGCACCAAGCTTGTACACATGCTGACACTTAGGAGTCAAGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATAAGGTGGGAAGACTTAAACAGAGATGGGATGGTAGGACAGTGA 5412 0.4085 MDCLQSIDNISPPQTDAGNDFLAWKHTHDGVFTIKSAYTSICHNSQDNLCKIWKRLWKCECPEKVRYFLWKISHDCIMTEVQRKKRGISSFDVCKRCGLAAESTTHAVRDCVWVRGIWEKLVKRDKIYTEIHNYKEAARMDRRVNSLQNPSAGNPMAWQPPDKGWYKINCDGSYWCNSDDISCGGVIRNSHGDWITGFAKKLGKGTVFQAELWGALIGLQTAWDLHLPRVILETDSTLVYNFITKGCSDSSPVVNMAKSFKDLLAKDWMVRIKHVHRDSNHLADILATSAHFNSFGLVSFDRVPDVCKATFLDDQNRVLAIFRLDRLLLSNSLHKPKCPELTTSNPSVSDFASAIKMEGKTEEVEDIGSASSGSFIDDSDDGSLTSELDDKVHLEEPLTEEEIEDLIAELLEVESKAAEAQEALEDESLAKVEIEVRRELEQTLQGDDLETAVANEMTTLREEWEAVLDDLETESAYLLEQLDISGIELPSLFKWIEREAPNGCCTEAWKKRNLWVGSQATDELAESVANAEKYLQAHRPVRRRHGKLLEEGASGFLEKKLCNETSDPVKEKAEVDWELFNKMFHDGGDADASFGSKNWASVYLASTPQQAALMGLEFPGVNEVEEIDDVDGNSTDPFIAAAIAYEKELELSDEQKRKFKKVKEEDDAIVDQKFQIHLKRRRYRKNKKQREMCSANPVMESLKQKSSNFSMEGACDDGKIVSNEDMEVGDNMNTDNIEGLGSSYNLDNEKPMNVDPLSEHSKLSSPDGEHRGTKRLNDGEVDTDTKKCRTITIESDDEAEAVENIEGLCCTVCDKVALKVYCHPLLKVIICGDCNSLMEEKIRFKDLNPDCSECICAWCGGSSELVSCKSCKTLFCNNCIKKNLGAEFLSEVQATGWHCCCCRPNLLQELSSQLEKAMESSDTSDSSSGSDSDSSHSEINVTISSKRKRKKKIRRILDDAELGEETKKKIAIEKERQERLASLRVQFSALSNIKSSSGYNGNLSEGASIEVLGDALTGYVVNVVREKGEEAVRIPPSISAKLKVHQVAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTALIVTPVNVLHNWRQEFLKWRPTELKPLRVFMLEDVSRDRRAELLAKWRAKGGIFLIGYTAFRNLSFGKHVKDRHVAREICHALQDGPDILVCDEAHMIKNIKADITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLNDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNDRASNETMRKRSFFAGYQALAQIWNHPGILQLTKEDKDYERQEDAVENFLVDDSSSDENSDYNVVVGEKMRCANEFLQGKVGNGYFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTSSSDVGDKVLVFSQSIPTLDLIELYLSRLSRRGKHGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTMSKEEMLHLFEFGDEENPETLAELSQENGHTRGHSLKHTVPHSNGTSNSDKLMESLLSKHYPKWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVHRVPLGESLPDQKPRVPNAAPPVSEAHSLSPTKLRNRFAIRKCTKLVHMLTLRSQGTKFGCSTVCGECAQEIRWEDLNRDGMVGQ 1803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0085 1803 Coils Coil 1682 1702 - -
Sto8g0085 1803 Coils Coil 454 481 - -
Sto8g0085 1803 Gene3D - 1307 1654 IPR027417 -
Sto8g0085 1803 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1448 1619 IPR001650 -
Sto8g0085 1803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1296 IPR027417 -
Sto8g0085 1803 MobiDBLite consensus disorder prediction 1726 1747 - -
Sto8g0085 1803 SMART helicmild6 1474 1571 IPR001650 -
Sto8g0085 1803 CDD RNase_H_like 168 287 IPR044730 -
Sto8g0085 1803 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1064 1247 IPR014001 -
Sto8g0085 1803 Pfam Helicase conserved C-terminal domain 1446 1571 IPR001650 -
Sto8g0085 1803 MobiDBLite consensus disorder prediction 918 946 - -
Sto8g0085 1803 MobiDBLite consensus disorder prediction 362 382 - -
Sto8g0085 1803 ProSiteProfiles RNase H type-1 domain profile. 162 292 IPR002156 GO:0003676|GO:0004523
Sto8g0085 1803 CDD SF2_C_SNF 1439 1582 - -
Sto8g0085 1803 Pfam SNF2-related domain 1065 1366 IPR000330 GO:0005524|GO:0140658
Sto8g0085 1803 PANTHER RAD54-LIKE 377 1797 - -
Sto8g0085 1803 Coils Coil 403 430 - -
Sto8g0085 1803 Pfam zinc-binding in reverse transcriptase 32 118 IPR026960 -
Sto8g0085 1803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1302 1640 IPR027417 -
Sto8g0085 1803 Gene3D - 165 291 IPR036397 GO:0003676
Sto8g0085 1803 ProSiteProfiles ADD domain profile. 798 930 IPR025766 -
Sto8g0085 1803 Gene3D - 1016 1296 IPR038718 -
Sto8g0085 1803 MobiDBLite consensus disorder prediction 740 781 - -
Sto8g0085 1803 CDD ADDz_ATRX 808 904 - -
Sto8g0085 1803 SMART ultradead3 1038 1259 IPR014001 -
Sto8g0085 1803 MobiDBLite consensus disorder prediction 918 941 - -
Sto8g0085 1803 PANTHER RAD54-LIKE 377 1797 IPR044574 GO:0016887
Sto8g0085 1803 Pfam Reverse transcriptase-like 169 290 IPR002156 GO:0003676|GO:0004523
Sto8g0085 1803 SUPERFAMILY Ribonuclease H-like 164 291 IPR012337 -
Sto8g0085 1803 MobiDBLite consensus disorder prediction 1632 1662 - -
Sto8g0085 1803 MobiDBLite consensus disorder prediction 762 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0085 Sto-Chr8 578292 600922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0085 1052 1601 RAD5 or RAD16-like Gene Family AT1G02670 25.439 1.96e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto8g0085 SNF2_N 1.5e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0085 K10779 - gmx:100794911 2165.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0085 8 578292 600922 Sto8g0085 8 578292 600922 ECH