Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0079 ATGGGATTGAAGAAGGGACCTTGGACTCCTGAAGAAGATCAGATTTTGATTTCTTATATTGAACGCTATGGCCATGGAAACTGGCGTGCACTTCCTAAGCAAGCTGGTTTGTTAAGGTGTGGAAAAAGTTGTAGGCTTCGGTGGATAAATTACTTACGCCCAGATATAAAACGAGGAAAATTCagcaaggaagaagaagaaatcatCCTCAAGCTACATCAAATTCTGGGAAATAGATGGTCTGCTATTGCAGCAAGATTACCAGGACGAACCGACAATGAAATAAAGAACTTTTGGCATACCCACTTGAAGAAGAGGCTGGAAAGACACAATGTGGGTGCGTCCTCCTCCTCGAGGGCTGTGAATTTGGTGATGCCTATGCCTCAACAAGTAGTAGTAACTGCTGCTAATGAAGGTTTAGCTTCAAGTTCAAGCACATTTTCATTTAATGTAGATCCAGCAATTCACAGTGCAATCTCTTCTGATGCATCAGGGGAAACCCTTAGCAGCCATAATTCCAATAAGATAAGTGAAGAAATGGATTTTTGGTACAATCTATTCATGAAAGCAGGACAGCCATCTTCTCTAGGGCATGCTAATTTAGGATAG 609 0.4023 MGLKKGPWTPEEDQILISYIERYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEEIILKLHQILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRLERHNVGASSSSRAVNLVMPMPQQVVVTAANEGLASSSSTFSFNVDPAIHSAISSDASGETLSSHNSNKISEEMDFWYNLFMKAGQPSSLGHANLG 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0079 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Sto8g0079 202 SUPERFAMILY Homeodomain-like 1 99 IPR009057 -
Sto8g0079 202 Gene3D - 59 122 - -
Sto8g0079 202 CDD SANT 60 103 IPR001005 -
Sto8g0079 202 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Sto8g0079 202 CDD SANT 7 52 IPR001005 -
Sto8g0079 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Sto8g0079 202 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 193 - -
Sto8g0079 202 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Sto8g0079 202 SMART sant 57 105 IPR001005 -
Sto8g0079 202 SMART sant 4 54 IPR001005 -
Sto8g0079 202 PANTHER MYB TRANSCRIPTION FACTOR 1 193 - -
Sto8g0079 202 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Sto8g0079 202 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Sto8g0079 202 Gene3D - 4 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0079 Sto-Chr8 543021 543799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0079 1 201 MYB Transcription Factor Family AT2G31180 50.935 1.95e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto8g0079 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0079 K09422 - gmx:102663040 258.07