Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g0037 ATGGATTTCGATGCCGCAATTCCTATCTCCCCAGCGGCCCTCTCTCAAGAAGCAATCTGGCAAATGAAATTGAGATCAAGTGAAACAATGGAATCTGGACCTTATCCGGAGCGTCCTGGAGAATTAGATTGTTCTTACTACATCAGAACAGGCCTTTGTAGATTTGGGGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCGATTGCTACTGCAAGGATGAAGGGCGAGTTCCCAGAAAGAATTGGACAACCAGAGTGCCAGGCATGGACATGCAAATTTGGAGCCACGTGCAAGTTTCATCATCCAAGAGAAAAGGCTGGGATTGCTGGAAGAGTTGCTTTAAATAGTTTAGGCTATCCACTTCGTCCAAATGAGCCTGAGTGTGCTTATTATTTGAGAACTGGACAATGCAAATTTGGAAGCACTTGCAAATTTCACCATCCTCAGCCAAATAATATGATGGTTTCATTGCGGGGTTCTCCTGTTTATCCTACTATTCAATCTCCAACTACACCGGGTCAGCAGTCATCATATGCAGGGGGGATTACAAATTGGTCCAGAGCTTCTTTTCTTCCTAGTCCACGCTGGCAAGGCCCTTCAAGCTATGCACCTTTAATTCTACCTCAGGGAGTGGTTTCAGTTCCAGGGTGGAGTGCATACAGTGGTCAGATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAACAATAGGAAATGGTCAAATCTATGGAACTTCCCGCCAGGGTGAGCCAGCAAATGCAGGATCTCAAGGGGCATATTCTCAAATTCGTTCTGGTTCTGTTCCTCTGGGGTTCTATGCGCTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTAGGTTTCATCATCCACGTGAGAGGCTAATACCTGCTCCTGACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAGCCATTGTGTGTCTTCTATTCGCGGTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCATCCAATGGGAGTCTTCGCATACGCATCACCTTCAGCTGATACCTCAGTCCGTCGTTTATTGGGTTCTTCATCAGGAACTGCTGCATTAAATTTATCATCGGACGGACTTGTTGAGTCAGGCTCGGGGAAATCCAGGCGGCTTTCATTGTCAGATAGTAGACAGATTTCTTCTGGTGAAGATAACATTGATGATGAGTGA 1272 0.4607 MDFDAAIPISPAALSQEAIWQMKLRSSETMESGPYPERPGELDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERIGQPECQAWTCKFGATCKFHHPREKAGIAGRVALNSLGYPLRPNEPECAYYLRTGQCKFGSTCKFHHPQPNNMMVSLRGSPVYPTIQSPTTPGQQSSYAGGITNWSRASFLPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQTIGNGQIYGTSRQGEPANAGSQGAYSQIRSGSVPLGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFAYASPSADTSVRRLLGSSSGTAALNLSSDGLVESGSGKSRRLSLSDSRQISSGEDNIDDE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g0037 423 ProSiteProfiles Zinc finger C3H1-type profile. 287 315 IPR000571 GO:0046872
Sto8g0037 423 MobiDBLite consensus disorder prediction 394 423 - -
Sto8g0037 423 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Sto8g0037 423 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 11 423 - -
Sto8g0037 423 SMART c3hfinal6 333 360 IPR000571 GO:0046872
Sto8g0037 423 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Sto8g0037 423 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Sto8g0037 423 SMART c3hfinal6 83 106 IPR000571 GO:0046872
Sto8g0037 423 SMART c3hfinal6 287 314 IPR000571 GO:0046872
Sto8g0037 423 Gene3D - 85 162 - -
Sto8g0037 423 Gene3D - 285 365 - -
Sto8g0037 423 Gene3D - 15 73 - -
Sto8g0037 423 SUPERFAMILY CCCH zinc finger 128 153 IPR036855 GO:0046872
Sto8g0037 423 SUPERFAMILY CCCH zinc finger 336 360 IPR036855 GO:0046872
Sto8g0037 423 PANTHER PROTEIN PHOSPHATASE RELATED 11 423 - -
Sto8g0037 423 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Sto8g0037 423 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Sto8g0037 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 152 IPR000571 GO:0046872
Sto8g0037 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 289 314 IPR000571 GO:0046872
Sto8g0037 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 335 360 IPR000571 GO:0046872
Sto8g0037 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 65 IPR000571 GO:0046872
Sto8g0037 423 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Sto8g0037 423 MobiDBLite consensus disorder prediction 394 414 - -
Sto8g0037 423 Pfam RNA-binding, Nab2-type zinc finger 93 105 - -
Sto8g0037 423 SUPERFAMILY CCCH zinc finger 291 317 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g0037 Sto-Chr8 303023 307771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g0037 19 423 C2H2 Transcription Factor Family AT3G02830 61.962 5.35e-176 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto8g0037 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g0037 - - gmx:100786261 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0037 8 303023 307771 Sto8g0037 8 303023 307771 ECH