Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2550 ATGTCTATCGAATCCTGCAACTGTATTGAGCCACAATGGCAAGCTGATGAATTGTTGATGAGATACCAATATATTTCAGATTTCTTCATTGCCCTTGCTTATTTTTCAATCCCTCTAGAGCTTATTTACTTTGTAAAGAAATCAGCTGTATTTCCATACAGATGGGTGCTCGTTCAGTTTGGTGCTTTCATAGTTCTATGTGGAGCAACGCATCTAATTAATTTATGGACCTTTACTATGCATTCAAGGACTGTGGCAGTAGTAATGACCACTTCTAAGGTTTTAACTGCTGTGGTATCGTGTGCAACTGCCCTTATGCTTGTACATATTATTCCTGATTTATTGAGTGTTAAGACTAGAGAGCTATTTTTGAAGAATAAGGCTGCAGAGCTTGATAGAGAAATGGGTTTGATTCGCACACAGGAGGAAACTGGCCGACATGTTAGGATGCTGACTCATGAGATTAGAAGCACTCTTGATAGACACACCATACTAAAAACAACTCTTGTTGAATTGGGTAGAACTTTGGCATTGGAGGAGTGTGCATTGTGGATGCCAACGCGAACTGGCTTGGAGCTTCAACTCTCCTACACATTGAGACAGCAGAACCCTGTTGGGTATACAGTACCTATCCATCTTCCTGTGATCAATCAAGTATTTAGCAGCAATCGTGCTGTAAAAATTTCGCCAAATTGTCCAGTGGCTAGATTACGGCCTCATGCTGGAAAATTCATGCCTGGAGAGGTAGTTGCTGTTCGGGTCCCTCTCCTACATCTTtctaattttcaaatatatgatTGGCCAGCAGTTTCATCAAGAAACTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGTGCCAGACAGTGGCATGTCCATGAGTTGGAGCTGGTTGAGGTTGTTGCTGATCAGGTAGCTGTTGCTCTTTCACATGCTGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATCAACTCATGGAGCAAAATGTTGCACTTGATCTCGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGCAATGATTTTTTGGCTGTTATGAATCACGAAATGAGAACTCCCATGCATGCAATTATTGCACTCTCCTCACTGTTACAGGAAACAGAGTTGACACCTGAGCAACGTCTAATGGTTGAGACAATACTGAAAAGTAGTAATCTATTGGCTACTCTCATAAATGATGTTTTAGATCTTTCGCGTCTTGAAGATGGCAGTCTGCAACTCGATTCAACTACATTTAACCTTCATTCTGTATTCAGAGAGGTCCTTAACTTGATTAAACCCGTTGCATCTGTCAAAAAGTTGTTACTCACATTACATTTAGGTCCAGACTTGCCAGTGTATGCTATTGGTGATGAAAAACGTCTCATGCAAACTATTCTGAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAAGAGGGAGGTATCTCCATCACTGCTTTTGTTGCAAAAGCTGAATCCCTCAAGGATATGAGATTCCCTGACTTTATTCCAGTGCCAAGTGATAATCACTTTTATTTGCGAGTTCAGGTGAAAGATTCAGGAGCAGGAATCAATCCACAAGATATACCTACATTATTCACTAAGTTTGCACAAACCCAAACATTAGCAACAAGAAATTCTAGTGGAAATGGACTTGGCCTTGCAATTTGTAAGagGTTTGTAAATCTTATGGAGGGGCATATTTGGATTGAGAGTGAAGGTATTGGTAAGGGTTGTACAGCTAGTTTTATTGTAAAACTCGGCATCCCAGATCGATCAAATGAATCTAAACCCTCATTTGCACCTAAAGTTCTGGGAAATCATGGCCCGTCAAACTTTGCAGGGCTCAAGGTTCTTGTCATGGATGATAATGGGGTTAGCAGGACAGTAACAAAGGGACTTCTTGTGCATCTAGGGTGCGATGTTACGACGGTAGGCACAAGCGAAGAATGCTTGCGTGTTCTTTCTCATGAACACAAGGTGGTGTTCATGGATGTGAGTTCAGGTATAGAAAGTTATGATCTTGCAGTACGAATACACGAGATGTTTACGAAACGTCAAGATAGACCCCTGATTGTTGCCCTAACTGGAAACACCAACAAGGTGACAAAAGAGAAGTGTATGAGGGTTGGAATGGATGGTCTGATATTGAAACCTGTTTCTGTTGATAAGATGAGGGGTGTGTTATCTGAACTGCTAGAGCACAGGGTTGTATTTGAAACCatttaa 2229 0.4092 MSIESCNCIEPQWQADELLMRYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTMHSRTVAVVMTTSKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRAVKISPNCPVARLRPHAGKFMPGEVVAVRVPLLHLSNFQIYDWPAVSSRNYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDSTTFNLHSVFREVLNLIKPVASVKKLLLTLHLGPDLPVYAIGDEKRLMQTILNVVGNAVKFSKEGGISITAFVAKAESLKDMRFPDFIPVPSDNHFYLRVQVKDSGAGINPQDIPTLFTKFAQTQTLATRNSSGNGLGLAICKRFVNLMEGHIWIESEGIGKGCTASFIVKLGIPDRSNESKPSFAPKVLGNHGPSNFAGLKVLVMDDNGVSRTVTKGLLVHLGCDVTTVGTSEECLRVLSHEHKVVFMDVSSGIESYDLAVRIHEMFTKRQDRPLIVALTGNTNKVTKEKCMRVGMDGLILKPVSVDKMRGVLSELLEHRVVFETI 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2550 742 PRINTS Bacterial sensor protein C-terminal signature 513 527 IPR004358 GO:0016310|GO:0016772
Sto7g2550 742 PRINTS Bacterial sensor protein C-terminal signature 531 541 IPR004358 GO:0016310|GO:0016772
Sto7g2550 742 PRINTS Bacterial sensor protein C-terminal signature 548 566 IPR004358 GO:0016310|GO:0016772
Sto7g2550 742 Gene3D - 410 594 IPR036890 -
Sto7g2550 742 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 457 587 IPR003594 -
Sto7g2550 742 Gene3D - 138 310 IPR029016 -
Sto7g2550 742 Pfam Response regulator receiver domain 618 726 IPR001789 GO:0000160
Sto7g2550 742 PANTHER ETHYLENE RECEPTOR 1-LIKE 3 739 - -
Sto7g2550 742 Pfam His Kinase A (phospho-acceptor) domain 346 410 IPR003661 GO:0000155|GO:0007165
Sto7g2550 742 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 3 739 - -
Sto7g2550 742 PIRSF Ethylen_sen_hybr_HK 1 740 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Sto7g2550 742 Gene3D - 311 409 - -
Sto7g2550 742 CDD HisKA 343 406 IPR003661 GO:0000155|GO:0007165
Sto7g2550 742 SMART gaf_1 160 319 IPR003018 GO:0005515
Sto7g2550 742 SUPERFAMILY CheY-like 612 734 IPR011006 -
Sto7g2550 742 ProSiteProfiles Response regulatory domain profile. 617 733 IPR001789 GO:0000160
Sto7g2550 742 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 399 587 IPR036890 -
Sto7g2550 742 SMART HKATPase_4 457 589 IPR003594 -
Sto7g2550 742 Pfam GAF domain 160 309 IPR003018 GO:0005515
Sto7g2550 742 Gene3D - 611 742 - -
Sto7g2550 742 SMART HisKA_10 345 410 IPR003661 GO:0000155|GO:0007165
Sto7g2550 742 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 331 411 IPR036097 GO:0000155|GO:0007165
Sto7g2550 742 SMART REC_2 616 729 IPR001789 GO:0000160
Sto7g2550 742 ProSiteProfiles Histidine kinase domain profile. 352 591 IPR005467 -
Sto7g2550 742 SUPERFAMILY GAF domain-like 160 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2550 Sto-Chr7 30772954 30775758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2550 3 740 Miscellaneous Gene Families AT1G66340 83.243 0.0 1257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto7g2550 GAF 2.3e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2550 K14509 - gmx:100795799 1288.86