Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2542 ATGCAACCGACATCTGCCGGTAGCAGCGGCGGCGGAGGCGGTGACGGCGGTGGACTTGGCCGGTTCCGTTCGACTCCAGCCACCTGGTTAGACGCACTGCTCAAGGAAGAAGACGAAGAGGACCCATTGGATACCACCCAGTGCTTCACTCAGCTGCTCGCCACAGGTACTGATAATAACCTGTCCAGAAATACGGCGTCGTTCGATTCGCCCCCTGGTGGAGGCGGTTTCGACGCTGGCTCATCGTCAACTGGGTTTTTCCGGCAGCATAGTTCTCCGGCGGGTTTTTTCGGGAATTCAGTGCTTCCCTCTGAAGCAGGCTACTTCTCCAAGTATGGGATTCAATCCAATTACGACATCGTTTCACAAGATGTTGATGTTTCTTCCATGGTTAATGCTAATCCAGTCAGACAGAAAGTTGAGCATGGTGGTAAAGCACCAGAAATGGATTTAGAGAAGATGTTAGAGGATTCAGTACCTTGTAGAGTTCGGGCAAAGCGTGGCTATGCTACACATCCAAGAAGCATTGCTGAAAggGTTAGGAGAACTCGAATAAGTGACCGCATAAGGAAGCTGCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGATATGTTAGACGAGGCAGTAGCATATGTGAAGTCTCTACAGAAGCAAATTGAGAGCACCAGAGGAGATGTAAATGCAATTCTCAATCTCAAGAATAAATTGGCCATTGTTCCCATAGGATAA 741 0.4831 MQPTSAGSSGGGGGDGGGLGRFRSTPATWLDALLKEEDEEDPLDTTQCFTQLLATGTDNNLSRNTASFDSPPGGGGFDAGSSSTGFFRQHSSPAGFFGNSVLPSEAGYFSKYGIQSNYDIVSQDVDVSSMVNANPVRQKVEHGGKAPEMDLEKMLEDSVPCRVRAKRGYATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKSLQKQIESTRGDVNAILNLKNKLAIVPIG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2542 246 Pfam Helix-loop-helix DNA-binding domain 174 220 IPR011598 GO:0046983
Sto7g2542 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983
Sto7g2542 246 SMART finulus 175 225 IPR011598 GO:0046983
Sto7g2542 246 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 15 224 - -
Sto7g2542 246 MobiDBLite consensus disorder prediction 60 84 - -
Sto7g2542 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 227 IPR036638 GO:0046983
Sto7g2542 246 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 224 - -
Sto7g2542 246 MobiDBLite consensus disorder prediction 1 23 - -
Sto7g2542 246 Gene3D - 170 241 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2542 Sto-Chr7 30724876 30728901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2542 21 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 50.000 2.20e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto7g2542 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2542 - - zju:107434526 216.468