Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2539 ATGGCGGGCGTTACCCATCTTCCCTGCGATACCTTAGGTGTCTGTATGGTCTGCAAGGCGACGCCTTCCGACGAAGAGAAGCTCACTTGCAAAACCTGCGTCAGTTACTGGCACGTCGCCTGTCTCTCTTCTCCTCCGGCGACCATGGCGGAGACTGTTGTGTGGCGGTGCTTTGACTGCTTGGAACTATCCTCCCTCTATGCCTCCGGCAAGGCGGTTCTCAAGGGGTCCGGCGAGCTGATTCCGGAGATTAAACCGATCGCGGCCGATGCTTCTCTCACGGAGCAGGCGAAGGACAAGAGTCGTCAAGAACTGTTGACTGGAAAAGCTGATGCGTCGAACGAAGAAGGCAAGGGCGAATGGAATAAGGATGTTTTTGACATCCTTAGTGGGAGTCTGAACTGCTCTTTCTGTATCCAAATTCCGGAGAGACCCGTGACGACTCCATGTGGCCACAATTTCTGCCTAAAATGCTTTGTGAAATGGATTGGGCAAGGGAAAAAAACATGTGCAAATTGTCGTAGCATTATCCCACCCAAAATGGCGAGCCAGCCACGCATCAATTCTGCACTTGTGTTTGCCATTCGTATGGCAAAAATATCCAAAAATAATACTGCTGGAGGACCCTCTAGAATTTGTCATTTCGTCCATAATCAAGATAGACCAGACACTGCATATACTACGGAGCGGGCTATAAGGAAAGGCAAAGCAAATGCAGCAAGTGGAAAGATTTTTGTAACTGTGGCTCAGGATCATTTTGGTCCAATTCCAGCTGAGAATGATCCAGTGCGGAATCAGGGTGTGCTGGTTGGTGCATGTTGGGAAGATAGGCTTGAATGCCGGCAATGGGGTGTTCACTTCCCTCATGTTAGTGGTATAGCTGGACAGTCAAATTATGGCGCACAATCTGTAGTTCTTTCTGGTGGTTATGTTGATGACGAGGATCACGGTGAATGGTTCTTGTACACAGGAAGTGGTGGTCGTGATCTAAGTGGCAATAAGCGCACGAACAAAACTCAATCTTTTGATCAAAAGTTTGAGAAGTACAACCTAGCTCTAAAAGTTAGTTGTATGAAGGGCTATCCAGTTCGAGTTGTAAGATCTCACAAAGAGAAGCGTTCCTCTTATGCCCCTGAGAAAGGATTACGTTATGATGGTGTTTATAGAATTGAAATGTGTTGGCAGAAAGAGGGACTGCAGGGTTTCAAGGTTTGCCGGTATTTGTTCATTAGATGTGACAATGAACCTGCCCCTTGGACAAGCGATGATCATGGTGATCGTCCCAGACCGTTGCCACAAATTCCTGAGTTGAAAGATGCTGTAGCCTTGTGTGAAAGGAAGGGCAGTCCATCTTGGGAATTTGATGAGGAAGATTCTCGTTGGAAGTGGAAGAAACCAGCACCTCCCAGCCAAAAACACACGAAAAGTGCGGACCCCAATGAGATTGAAGGGGCAAGGAGAGCTTTCAGGAAAGCCCAAAATATGTCAGTCAGGGCAAGATTGCTGAGAGAATTCAGTTGCCTTATCTGCACGCAAGTTATGGTTTCTCCTGTGACATCACCCTGTGCTCATAACTTCTGCAAGTCATGTTTAGAAGGTGCATTTGCTGGTCAGGCTTTTGTGAGAGACCGAAGCAGGGGGGGAAGATCACTTCGGTCCCAGAAAAATGTGATGAAATGTCCTGCTTGCCCTACTGACATTGCTGATTTTCTTCAGAACCTTCGTGTTAACACGGAGCTGAAGGGTTTGATTGAGTCATTGAAGACCAAGgctgaagaagaaaatgaagatgcAAGTGGGAATAAAGATGGAGCAGAAGAAGAGAGTGATGAAACTGCTGAAGCTGGAAAGGATGAAGAAAACTCAACTGAGAAGCTTAATGATTCATCAGCTGGAGAATCTGATGTGAAGGAACAGAAGTCAGGAGAAGTTGAAGTAGCCAATGAGGTGGAAGATGCTGATGTGAAGTGTGATGGAAAAAGGAAGAGGGATGATACTGAAGAACTTGTGCCCAAGAAAGAGGATAGTAAGAAGGCCAGAGGAGGCTGA 2049 0.4641 MAGVTHLPCDTLGVCMVCKATPSDEEKLTCKTCVSYWHVACLSSPPATMAETVVWRCFDCLELSSLYASGKAVLKGSGELIPEIKPIAADASLTEQAKDKSRQELLTGKADASNEEGKGEWNKDVFDILSGSLNCSFCIQIPERPVTTPCGHNFCLKCFVKWIGQGKKTCANCRSIIPPKMASQPRINSALVFAIRMAKISKNNTAGGPSRICHFVHNQDRPDTAYTTERAIRKGKANAASGKIFVTVAQDHFGPIPAENDPVRNQGVLVGACWEDRLECRQWGVHFPHVSGIAGQSNYGAQSVVLSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKTQSFDQKFEKYNLALKVSCMKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEMCWQKEGLQGFKVCRYLFIRCDNEPAPWTSDDHGDRPRPLPQIPELKDAVALCERKGSPSWEFDEEDSRWKWKKPAPPSQKHTKSADPNEIEGARRAFRKAQNMSVRARLLREFSCLICTQVMVSPVTSPCAHNFCKSCLEGAFAGQAFVRDRSRGGRSLRSQKNVMKCPACPTDIADFLQNLRVNTELKGLIESLKTKAEEENEDASGNKDGAEEESDETAEAGKDEENSTEKLNDSSAGESDVKEQKSGEVEVANEVEDADVKCDGKRKRDDTEELVPKKEDSKKARGG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2539 682 MobiDBLite consensus disorder prediction 587 682 - -
Sto7g2539 682 MobiDBLite consensus disorder prediction 457 482 - -
Sto7g2539 682 MobiDBLite consensus disorder prediction 616 682 - -
Sto7g2539 682 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Sto7g2539 682 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 668 IPR045134 -
Sto7g2539 682 SMART PHD_3 14 61 IPR001965 -
Sto7g2539 682 SUPERFAMILY PUA domain-like 237 433 IPR015947 -
Sto7g2539 682 ProSiteProfiles YDG domain profile. 263 411 IPR003105 -
Sto7g2539 682 Gene3D - 234 430 IPR036987 -
Sto7g2539 682 Coils Coil 577 608 - -
Sto7g2539 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 200 IPR013083 -
Sto7g2539 682 Pfam SAD/SRA domain 265 414 IPR003105 -
Sto7g2539 682 MobiDBLite consensus disorder prediction 599 615 - -
Sto7g2539 682 SUPERFAMILY FYVE/PHD zinc finger 7 62 IPR011011 -
Sto7g2539 682 ProSiteProfiles Zinc finger RING-type profile. 135 174 IPR001841 -
Sto7g2539 682 SMART G9a_1 258 415 IPR003105 -
Sto7g2539 682 ProSiteProfiles Zinc finger RING-type profile. 507 563 IPR001841 -
Sto7g2539 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 62 IPR013083 -
Sto7g2539 682 Pfam RING-type zinc-finger 507 561 IPR027370 -
Sto7g2539 682 CDD RING-HC 135 173 - -
Sto7g2539 682 SUPERFAMILY RING/U-box 502 589 - -
Sto7g2539 682 ProSitePatterns Zinc finger RING-type signature. 522 531 IPR017907 -
Sto7g2539 682 Pfam Zinc finger, C3HC4 type (RING finger) 135 173 IPR018957 GO:0046872
Sto7g2539 682 SUPERFAMILY RING/U-box 127 181 - -
Sto7g2539 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 611 IPR013083 -
Sto7g2539 682 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 668 - -
Sto7g2539 682 SMART ring_2 15 60 IPR001841 -
Sto7g2539 682 SMART ring_2 507 563 IPR001841 -
Sto7g2539 682 SMART ring_2 135 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2539 Sto-Chr7 30698280 30702628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2539 1 599 C2H2 Transcription Factor Family AT5G39550 59.504 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2539 K10638 - qsu:112013932 912.524