Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2529 ATGAATGAAGAGATTATGGGAAGAGGAAAGATCGAGATAAAGAGGATAGAGAACACAACAAATAGGCAAGTGACATTCTGTAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTTCCCTCATTGTCTTCTCCAGTCGTGGTCGTCTCTATGAGTATTCTAACAACAACATAAGGTCAACTATTGAGAGGTACAAAAAGGCTTGTTCAGATAACTCAAGTGCAAGCTCTATTACTGAAATCAATGctcagTACTATCAGCAAGAATCTGCGAAGCTGCGACAGCAAATCCAGATGCTGCAAAATTCGAACAGGCACTTGATGGGTGATGCCTTGAGCACACTCACTGTGAAGGAACTGAAGCAGCTGGAAAATAGACTTGAAAGAGGCATCTCTAGAATTAGGTCTAAGAAGCACGAGATGCTTCTGGCAGAAATCGAGTACCTGCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTTTGCCTTCGGACTAAGaTAGCAGAAGTGGAGAGAGTAGAAGAAGCAAACATGGTATCAGCAGGAGAGGAGCTGAATGCAATGCAAGCTTTGGCTAATTCTCGcaatttcttcaatccaaacatCATGGAACCTTCTCCTCATCCTTACCCTCCTTCCTCTGACAAGAAGATGCTTCATCTTGGGTGA 696 0.4152 MNEEIMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNNIRSTIERYKKACSDNSSASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYLQKREIELENENLCLRTKIAEVERVEEANMVSAGEELNAMQALANSRNFFNPNIMEPSPHPYPPSSDKKMLHLG 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2529 231 MobiDBLite consensus disorder prediction 208 231 - -
Sto7g2529 231 Gene3D - 18 115 IPR036879 GO:0003677|GO:0046983
Sto7g2529 231 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Sto7g2529 231 Coils Coil 126 168 - -
Sto7g2529 231 Coils Coil 92 112 - -
Sto7g2529 231 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 7 219 - -
Sto7g2529 231 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Sto7g2529 231 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Sto7g2529 231 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Sto7g2529 231 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto7g2529 231 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Sto7g2529 231 Pfam K-box region 91 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto7g2529 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 7 219 - -
Sto7g2529 231 CDD MADS_MEF2_like 7 80 IPR033896 GO:0000977|GO:0045944
Sto7g2529 231 ProSitePatterns MADS-box domain signature. 8 62 IPR002100 GO:0003677|GO:0046983
Sto7g2529 231 SUPERFAMILY SRF-like 7 80 IPR036879 GO:0003677|GO:0046983
Sto7g2529 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2529 Sto-Chr7 30617809 30622736 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2529 5 231 MADS-box Gene Family AT4G09960 73.391 2.07e-117 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto7g2529 K-box 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2529 K09264 - csv:101208072 385.571