Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2521 ATGTCCACGGAGGAATCAATGCACAAGGTTTGGGTGGGTCTTGTTCGTCTTCAACTGGAAACTATTGCCTACTTTGGTCAGATCCCAGGGGCAAATCCGGCAATTCCTGGAATGTTTCAAAACATGTTTCCATTGGCTACCACTCAGTTGCAGCAATTCAGTGCCCTTCCTGTCATGCCCGTCCAGGCTATGACACAACAgGCTACCCGACATGCTAGGCGGGTCTATGTTGGAGGACTCCCTCCTACAGCCAATGAGCAGTCTGTTGCTACCTTCTTCAGTCAGGTTATGGCTAAGATTGGAGGAAATACTGCTGGTCCAGGTGATGCAGTTGTTAATGTTTACATTAACCATGACAAGAAGTTTGCTTTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTCTTGATGGGATTATTTTTGAGGGGGCACCTGTAAAGGTGAGGAGACCAACTGATTATAACCCTTCTCTGGCTGCAACACTAGGTCCAAGCCAGCCTAACCCAAACCTTAACTTGGGTGCTGTTGGCTTAACACCCGGCTCTGCTGGTGGACTGGATGGTCCTGATCGTATTTTTGTGGGTGGACTCCCGTATTACTTTACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCCCTTCGGGGCTTTGACCTGGTGAAAGATAGAGAAACAGGAAACTCAAAAGGTTATGCATTCTGTGTTTATCAAGATCTCGCAGTTACAGATATTGCATGTGCTGCTTTGAATGGTATAAAAATGGGAGATAAGACTCTTACGGTTAGACGAGCTAATCAAGGTGCAAATCAGCCAAAACCTGAGCAAGAGAACATATTAATGCATGCACAGCAGCAGATTGCTCTACAGaaaCTCATGCTTCAACCAGCATTAGTGACAGCAACGAAGGTGGTATGTTTAAGTCAGGCTATATCCGCTGATGAGCTCAAAGATGACGAGGATTATGAAGAAATTGTTGAGGATATGAGACAAGAGTGTTCCAAATTTGGTACTTTGGTGAATGTGGTGATCCCTCGTCCACAACCAGATGGTGAACCTGCACCGGGTGTTGGAAAGGTGTTTTTGGagtatgctgacgtggaaggtgcTACCAAAGCACGAACCGGGTTGAATGGGCGGAAGTTTGGCGGTAACCAAGTAGTGGCTGTGTTTTATCCGGAGAATAAATTTGCTCAGGGAGATTATGAAGGCTAG 1227 0.4507 MSTEESMHKVWVGLVRLQLETIAYFGQIPGANPAIPGMFQNMFPLATTQLQQFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQENILMHAQQQIALQKLMLQPALVTATKVVCLSQAISADELKDDEDYEEIVEDMRQECSKFGTLVNVVIPRPQPDGEPAPGVGKVFLEYADVEGATKARTGLNGRKFGGNQVVAVFYPENKFAQGDYEG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2521 408 Gene3D - 68 169 IPR012677 -
Sto7g2521 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 264 IPR000504 GO:0003723
Sto7g2521 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 391 IPR000504 GO:0003723
Sto7g2521 408 Gene3D - 302 407 IPR012677 -
Sto7g2521 408 CDD RRM1_U2AF65 72 154 - -
Sto7g2521 408 PANTHER RNA-BINDING PROTEIN 22 407 - -
Sto7g2521 408 SMART rrm1_1 308 395 IPR000504 GO:0003723
Sto7g2521 408 SMART rrm1_1 194 267 IPR000504 GO:0003723
Sto7g2521 408 SMART rrm1_1 74 152 IPR000504 GO:0003723
Sto7g2521 408 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 18 406 IPR006529 GO:0003723|GO:0005634|GO:0006397
Sto7g2521 408 CDD RRM2_U2AF65 193 269 - -
Sto7g2521 408 SUPERFAMILY RNA-binding domain, RBD 194 399 IPR035979 GO:0003676
Sto7g2521 408 CDD RRM3_U2AF65 306 394 - -
Sto7g2521 408 Gene3D - 184 289 IPR012677 -
Sto7g2521 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 156 IPR000504 GO:0003723
Sto7g2521 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 399 IPR000504 GO:0003723
Sto7g2521 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Sto7g2521 408 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 22 407 - -
Sto7g2521 408 SUPERFAMILY RNA-binding domain, RBD 54 159 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2521 Sto-Chr7 30543273 30545832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2521 195 387 Eukaryotic Initiation Factors Gene Family AT1G22760 24.742 5.05e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2521 K12837 - gmx:100793801 725.317