Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2502 ATGGATGAGCGAAAGCGTAAATCTAGGAAGGAAGATTCTGAGGGGAAAGAAGAGGATTCCAAGAGGAGTCGACGTGATCGAGACCGTGAGAGAACTGGAGAAAGAGGTAAGGATAGAAGCGAAAGGAGGCACAGGGATAGAGAGAAGAAGGATCGTGAGAGCCAACgctatgagagagagaaaagtagTGATTCTGATGAAAGATAtgatagagaaagagagaagcatAGAGATAAAGATAGAACTCCAGTTCAACGTAGGGAAGTTGATAGTGAGTATAGCGATGATGATTCTAGGGATAGAGATAGAAAGAGGCATAAGAAAGAGGATGATGATTACAAggggagagagaaggaaaagaatgTCAGCAAGTCAAACAAGCATACTGAGAATATTGAAGGGAGCCCAAGGAAGAAGAGTGGCCATGATAACTTGGATACCAAAGAAAGCAAACCCACTCGTGAAGAGGAGATAGAGGATGAACATAGGAGGTTGGATGAAGAGATGgaaaagaggaggaggagagttCAGGAGTGGCAAGAGCTGAGGAGGAAGAGGGAAGAAGCTGAGAGAGAAAAGCATGGTGAAGCAAGTGCTGATGAACCTAAGTCTGGAAAGGCCTGGACGCTTGAAGGGGAGTCTGATGATGAAGAAGGAACCACTACAGTGAAGCCACCTACAGCTATGGATGTAGATGAAGATGGAAAACCTTCTGATAAAGAACCTAAGGATTCGATGGTGGTAGATGCTGATAATGGAACTGTTGCATCTAATTTACAGGATGAAGCTAATGGTTCTCATGCTGATGAAGAAATTGATCCATTGGATGCTTTCATGAGTTCTATGGTGCTGCCGGAAGTTGAAAAGCTGAACAGTGCTGTGGCTACTTCAGCTTCTGATAGAACTGCAGACATAAAGCCCAAAGATAAAGGGGTAGAGCAAACTTATGGTGGACACTCTAGGAAAGGTTCAAATAAATCTATTGGGAGAATAATTCCTGGTGAAGAGTCTGATGAAGATTATGCAGACCTTGAAATTGAAGATGATCCgatagatgaagatgatgatgagttCATGAAAAgagtaaagaaaacaaaagctGAGAAACTTTCTATTGTTGACCACTCAAAGATTGATTATAAACCATTCaagaaaaatttttatattgaagTAAAGGAGATCGCAAAGTTGACTCTTGAAGAAGTTGCAGCATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCGAAGCCTGTAAAATCATGGCATCAGATAGGACTTACCAGCAAAATTTTGGAGACAATAAAGAAACTTAATTATGAAAAGCCAATGCCTATTCAAGCTCAGGCCCTTCCTATAATTATGAGCGGTAGAGACTGCATAGGAATTGCTAAAACCGGGTCAGGGAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCACATCAAGGATCAGCCGCCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATAATGGCCCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGACATAAAGAAGTTTGCAAAGGTACTAGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATCAGTGAGTTAAAACGTGGTGCTGAGATTGTGGTTTGCACCCCAGGTAGGATGATTGACATACTATGTACTAGTGGTGGAAAGATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGGTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGGCCAGATCGTCAAACTGTTCTCTTTTCTGCTACTTTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTAGACAAACCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTGAACAAGGACATAACACAGCTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCTTAAGGCTCTTAGAATTATTAGGGGAGTGGTATGAGAAGGGAAAGATTTTGATATTTGTCCACTCGCAGGAAAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCCACTATTTCTGACTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACTAGTGTTGCTGCAAGAGGATTAGATGTCAAGGAGCTTGAATTGGTAATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGAGCTGGCCGGAAGGGTTGCGCTATCACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCCTTGGAGTTATCTGAGCAAATAGTTCCTGATGACCTAAAAGCTCTTGCTGATGGATTTATGGCAAAAGTTACTCAAGGGCTTGAACAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTCAAAtttaatgaagaagaagatgaggtGAGGAGAGCAGCGAAGAAAGCACAAGCTAAAGAATATGGGTTTGAAGAAGACAAGTCAGAttctgaagatgaagatgagggTATTAGGAAGGCGGGAGGTGACATCACACAGCATCCTGCTCTTGCTCAGATTCTTGTTAATGCTACAAAAGCAAATTCACCTGCATTACCTGCTACTTCTCCGCTCATTTCAAATGGCGGGCTTCCTGTTTCTTTGCCAGCTGTTCTAGGTCTACAGACTGCAGCAGTCATGCCTGGGACAGGGTTGCCTATTCTTCCAAATGATGGGGCAACTCGAGCAGCATTAGCTGCTATGAACCTGCAAAATAAATTGGCAAAGATTGCTGGTGCTATGCCAGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCTCAGAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTTGGTCCAATTTCTGAGTGGACTGGAGCTGCTATTACCACTAGGGGTCAGTATTTCCCACCCGGTAAGGTGCCAGGACCTGGTGAACGCAAACTTTATTTGTTTATTGAGGGTCCTAGTGAACAGTCTGTTAAGAGAGCAAAAGCAGAACTGAAGCGTGTGTTGGAAGATATCACAAATCAAGCTTTGCAACTTCCTGGTGGTGCTCAACCTGGCAAATACTCTGTTGTATAA 3177 0.4092 MDERKRKSRKEDSEGKEEDSKRSRRDRDRERTGERGKDRSERRHRDREKKDRESQRYEREKSSDSDERYDREREKHRDKDRTPVQRREVDSEYSDDDSRDRDRKRHKKEDDDYKGREKEKNVSKSNKHTENIEGSPRKKSGHDNLDTKESKPTREEEIEDEHRRLDEEMEKRRRRVQEWQELRRKREEAEREKHGEASADEPKSGKAWTLEGESDDEEGTTTVKPPTAMDVDEDGKPSDKEPKDSMVVDADNGTVASNLQDEANGSHADEEIDPLDAFMSSMVLPEVEKLNSAVATSASDRTADIKPKDKGVEQTYGGHSRKGSNKSIGRIIPGEESDEDYADLEIEDDPIDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFKKNFYIEVKEIAKLTLEEVAAYRKQLELKIHGKDVPKPVKSWHQIGLTSKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLDKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKALADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDITQHPALAQILVNATKANSPALPATSPLISNGGLPVSLPAVLGLQTAAVMPGTGLPILPNDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2502 1058 MobiDBLite consensus disorder prediction 302 316 - -
Sto7g2502 1058 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 578 586 IPR000629 -
Sto7g2502 1058 MobiDBLite consensus disorder prediction 295 339 - -
Sto7g2502 1058 Pfam Helicase conserved C-terminal domain 657 765 IPR001650 -
Sto7g2502 1058 SMART helicmild6 684 765 IPR001650 -
Sto7g2502 1058 Gene3D - 375 632 IPR027417 -
Sto7g2502 1058 CDD SF2_C_DEAD 644 774 - -
Sto7g2502 1058 MobiDBLite consensus disorder prediction 229 247 - -
Sto7g2502 1058 MobiDBLite consensus disorder prediction 1 220 - -
Sto7g2502 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 781 IPR027417 -
Sto7g2502 1058 Pfam DEAD/DEAH box helicase 448 619 IPR011545 GO:0003676|GO:0005524
Sto7g2502 1058 MobiDBLite consensus disorder prediction 1 269 - -
Sto7g2502 1058 MobiDBLite consensus disorder prediction 839 853 - -
Sto7g2502 1058 Coils Coil 155 192 - -
Sto7g2502 1058 CDD DEADc_DDX46 412 633 - -
Sto7g2502 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 454 632 IPR014001 -
Sto7g2502 1058 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 423 451 IPR014014 GO:0003724
Sto7g2502 1058 Coils Coil 1022 1045 - -
Sto7g2502 1058 Gene3D - 633 807 IPR027417 -
Sto7g2502 1058 SMART ultradead3 442 647 IPR014001 -
Sto7g2502 1058 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 78 879 - -
Sto7g2502 1058 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 643 804 IPR001650 -
Sto7g2502 1058 MobiDBLite consensus disorder prediction 839 871 - -
Sto7g2502 1058 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 78 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2502 Sto-Chr7 30387748 30391116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2502 410 785 Eukaryotic Initiation Factors Gene Family AT3G19760 32.105 9.96e-59 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2502 K12811 - gmx:100784306 1565.82